PMC:7376845 / 16389-17077
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T98 | 86-98 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T99 | 497-508 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T100 | 598-606 | Body_part | denotes | glycines | http://purl.org/sig/ont/fma/fma82753 |
| T101 | 615-624 | Body_part | denotes | cysteines | http://purl.org/sig/ont/fma/fma82751 |
| T102 | 658-666 | Body_part | denotes | prolines | http://purl.org/sig/ont/fma/fma82761 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 393 | 69-77 | Species | denotes | SARS-CoV | Tax:694009 |
| 399 | 204-215 | Species | denotes | coronavirus | Tax:11118 |
| 400 | 219-229 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 401 | 256-269 | Species | denotes | coronavirus 2 | Tax:2697049 |
| 402 | 133-137 | Disease | denotes | MERS | MESH:D018352 |
| 403 | 139-171 | Disease | denotes | Middle East respiratory syndrome | MESH:D018352 |
| 406 | 598-606 | Chemical | denotes | glycines | MESH:D005998 |
| 407 | 615-624 | Chemical | denotes | cysteines | MESH:D003545 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T146 | 69-77 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T147 | 69-73 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T148 | 173-177 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T149 | 219-227 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T150 | 219-223 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T177 | 46-48 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T178 | 46-48 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T179 | 287-294 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T144 | 46-48 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T145 | 86-98 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T146 | 497-508 | Chemical | denotes | amino acids | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T147 | 497-502 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T148 | 503-508 | Chemical | denotes | acids | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T149 | 562-569 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T114 | 0-132 | Sentence | denotes | Figure 1 Multiple sequence alignment for the S2 subunit fragment of SARS-CoV-1 spike glycoprotein with other relevant coronaviruses |
| T115 | 133-138 | Sentence | denotes | MERS: |
| T116 | 139-270 | Sentence | denotes | Middle East respiratory syndrome; SARS: severe acute respiratory coronavirus 1; SARS-CoV-2: severe acute respiratory coronavirus 2. |
| T117 | 271-443 | Sentence | denotes | The name of the viruses, for which sequences are being compared figure on the left side of the alignment, together with the respective sequences’ GenBank accession numbers. |
| T118 | 444-688 | Sentence | denotes | Colour schemes represent the following categories of amino acids: blue – hydrophobic, cyan – aromatic, green – polar, magenta – negative charge, orange – glycines, pink – cysteines, red – positive charge, yellow – prolines, white – unconserved. |