PMC:7371427 / 79303-80106 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7371427","sourcedb":"PMC","sourceid":"7371427","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7371427","text":"Profiling expression of coronavirus receptors in single-cell datasets\nFor each single-cell dataset, we examined the expression of ACE2, TMPRSS2, ANPEP, and DPP4. We generally considered a cell population to potentially express a gene if at least 5% of cells from that cluster showed non-zero expression of this gene. For each dataset, we show a figure which includes a UMAP dimensionality reduction plot colored by annotated cell type along with identical plots colored by the expression level of each coronavirus receptor in all individual cells. In some cases, we also show violin plots from the platform which automatically integrate literature-derived insights to highlight whether there exist textual associations between the queried gene and the tissue/cell types identified in the selected study.","divisions":[{"label":"title","span":{"begin":0,"end":69}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T766","span":{"begin":56,"end":60},"obj":"Body_part"},{"id":"T767","span":{"begin":86,"end":90},"obj":"Body_part"},{"id":"T768","span":{"begin":188,"end":192},"obj":"Body_part"},{"id":"T769","span":{"begin":229,"end":233},"obj":"Body_part"},{"id":"T770","span":{"begin":252,"end":257},"obj":"Body_part"},{"id":"T771","span":{"begin":311,"end":315},"obj":"Body_part"},{"id":"T772","span":{"begin":425,"end":429},"obj":"Body_part"},{"id":"T773","span":{"begin":541,"end":546},"obj":"Body_part"},{"id":"T774","span":{"begin":739,"end":743},"obj":"Body_part"},{"id":"T775","span":{"begin":752,"end":758},"obj":"Body_part"},{"id":"T776","span":{"begin":759,"end":763},"obj":"Body_part"}],"attributes":[{"id":"A766","pred":"fma_id","subj":"T766","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A767","pred":"fma_id","subj":"T767","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A768","pred":"fma_id","subj":"T768","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A769","pred":"fma_id","subj":"T769","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A770","pred":"fma_id","subj":"T770","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A771","pred":"fma_id","subj":"T771","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A772","pred":"fma_id","subj":"T772","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A773","pred":"fma_id","subj":"T773","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A774","pred":"fma_id","subj":"T774","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A775","pred":"fma_id","subj":"T775","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A776","pred":"fma_id","subj":"T776","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T766","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T767","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T768","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T769","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T770","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T771","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T772","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T773","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T774","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T775","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T776","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T340","span":{"begin":752,"end":758},"obj":"Body_part"}],"attributes":[{"id":"A340","pred":"uberon_id","subj":"T340","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"subj":"T340","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1192","span":{"begin":56,"end":60},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1193","span":{"begin":86,"end":90},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1194","span":{"begin":186,"end":192},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1195","span":{"begin":227,"end":228},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1196","span":{"begin":229,"end":233},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1197","span":{"begin":252,"end":257},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1198","span":{"begin":311,"end":315},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1199","span":{"begin":343,"end":344},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1200","span":{"begin":367,"end":368},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T1201","span":{"begin":425,"end":434},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T1202","span":{"begin":541,"end":546},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1203","span":{"begin":739,"end":743},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T1204","span":{"begin":759,"end":769},"obj":"http://purl.obolibrary.org/obo/CL_0000000"}],"attributes":[{"subj":"T1192","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1193","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1194","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1195","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1196","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1197","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1198","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1199","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1200","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1201","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1202","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1203","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1204","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T487","span":{"begin":0,"end":69},"obj":"Sentence"},{"id":"T488","span":{"begin":70,"end":161},"obj":"Sentence"},{"id":"T489","span":{"begin":162,"end":316},"obj":"Sentence"},{"id":"T490","span":{"begin":317,"end":547},"obj":"Sentence"},{"id":"T491","span":{"begin":548,"end":803},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T487","pred":"source","obj":"LitCovid-sentences"},{"subj":"T488","pred":"source","obj":"LitCovid-sentences"},{"subj":"T489","pred":"source","obj":"LitCovid-sentences"},{"subj":"T490","pred":"source","obj":"LitCovid-sentences"},{"subj":"T491","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecac","default":true},{"id":"LitCovid-PD-UBERON","color":"#ec9393"},{"id":"LitCovid-PD-CLO","color":"#93adec"},{"id":"LitCovid-sentences","color":"#c7ec93"}]}]}}