PMC:7371427 / 79303-80106
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T766 | 56-60 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T767 | 86-90 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T768 | 188-192 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T769 | 229-233 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T770 | 252-257 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T771 | 311-315 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T772 | 425-429 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T773 | 541-546 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T774 | 739-743 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T775 | 752-758 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T776 | 759-763 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T340 | 752-758 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1192 | 56-60 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1193 | 86-90 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T1194 | 186-192 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a cell |
| T1195 | 227-228 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1196 | 229-233 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T1197 | 252-257 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1198 | 311-315 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T1199 | 343-344 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1200 | 367-368 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1201 | 425-434 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell type |
| T1202 | 541-546 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T1203 | 739-743 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T1204 | 759-769 | http://purl.obolibrary.org/obo/CL_0000000 | denotes | cell types |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T487 | 0-69 | Sentence | denotes | Profiling expression of coronavirus receptors in single-cell datasets |
| T488 | 70-161 | Sentence | denotes | For each single-cell dataset, we examined the expression of ACE2, TMPRSS2, ANPEP, and DPP4. |
| T489 | 162-316 | Sentence | denotes | We generally considered a cell population to potentially express a gene if at least 5% of cells from that cluster showed non-zero expression of this gene. |
| T490 | 317-547 | Sentence | denotes | For each dataset, we show a figure which includes a UMAP dimensionality reduction plot colored by annotated cell type along with identical plots colored by the expression level of each coronavirus receptor in all individual cells. |
| T491 | 548-803 | Sentence | denotes | In some cases, we also show violin plots from the platform which automatically integrate literature-derived insights to highlight whether there exist textual associations between the queried gene and the tissue/cell types identified in the selected study. |