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PMC:7371427 / 34178-35674 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T421 95-111 Body_part denotes small intestinal http://purl.org/sig/ont/fma/fma7200
T422 112-123 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T423 176-180 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T424 257-272 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T425 278-282 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T426 352-356 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T427 376-380 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T428 641-651 Body_part denotes enterocyte http://purl.org/sig/ont/fma/fma62122
T429 673-688 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T430 751-762 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T431 856-866 Body_part denotes enterocyte http://purl.org/sig/ont/fma/fma62122
T432 888-903 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T433 965-976 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T434 1123-1127 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T435 1137-1140 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T436 1154-1169 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T437 1222-1226 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T438 1302-1317 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T439 1394-1398 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T440 1441-1444 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T441 1472-1487 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T170 95-111 Body_part denotes small intestinal http://purl.obolibrary.org/obo/UBERON_0002108
T171 257-272 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T172 263-272 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T173 673-688 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T174 679-688 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T175 888-903 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T176 894-903 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T177 1154-1169 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T178 1160-1169 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T179 1302-1317 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T180 1308-1317 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T181 1472-1487 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T182 1478-1487 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160

LitCovid-PubTator

Id Subject Object Predicate Lexical cue
99 939-943 Chemical denotes DPP4

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T639 39-40 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T640 95-111 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestinal
T641 126-127 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T642 176-180 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T643 217-222 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T644 226-227 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T645 257-272 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T646 278-282 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T647 344-345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T648 352-356 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T649 376-380 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T650 435-436 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T651 438-443 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Genes
T652 546-547 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T653 673-688 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T654 888-903 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T655 1123-1127 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T656 1148-1153 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T657 1154-1169 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T658 1172-1173 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T659 1222-1226 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T660 1263-1268 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T661 1272-1273 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T662 1296-1301 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T663 1302-1317 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T664 1320-1321 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T665 1323-1328 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Genes
T666 1394-1398 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T667 1466-1471 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T668 1472-1487 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T39 41-56 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T40 176-191 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T41 278-293 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T42 591-606 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcriptional
T43 807-822 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcriptional
T44 1222-1237 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T45 1394-1409 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T203 0-9 Sentence denotes Figure 5.
T204 11-124 Sentence denotes Coronavirus receptors share a transcriptional signature correlated to maturation of small intestinal enterocytes.
T205 125-273 Sentence denotes (A) Distribution of cosine similarity between the ‘gene expression vectors’ of ACE2 and all genes in a scRNAseq study of the murine small intestine.
T206 274-689 Sentence denotes The gene expression vector corresponds to the set of CP10K values for a given gene in each individual cell from the selected populations in the selected study. (B) Genes similar to ACE2 (cosine similarity >0.4) sorted by literature-derivation association. Arrow indicates a sort option available on the platform. (C) Transcriptional expression of ANPEP correlated to enterocyte maturation in murine small intestine.
T207 690-904 Sentence denotes Violin plots show distribution of ANPEP expression levels in enterocytes at different stages of differentiation. (D) Transcriptional expression of DPP4 correlated to enterocyte maturation in murine small intestine.
T208 905-1016 Sentence denotes Violin plots show distribution of DPP4 expression levels in enterocytes at different stages of differentiation.
T209 1017-1046 Sentence denotes Figure 5—figure supplement 1.
T210 1048-1170 Sentence denotes Coronavirus receptors show highly correlated expression patterns by single cell and bulk RNA-seq in human small intestine.
T211 1171-1496 Sentence denotes (A) Distribution of cosine similarity between the ‘gene expression vectors’ of ACE2 and all genes in a scRNAseq study of the human small intestine. (B) Genes similar to ACE2 sorted by literature-derivation association. (C) Gene expression correlations to ACE2 from bulk RNA-sequencing (GTEx) of human small intestine samples.