PMC:7371427 / 34178-35674
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T421 | 95-111 | Body_part | denotes | small intestinal | http://purl.org/sig/ont/fma/fma7200 |
T422 | 112-123 | Body_part | denotes | enterocytes | http://purl.org/sig/ont/fma/fma62122 |
T423 | 176-180 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T424 | 257-272 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T425 | 278-282 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T426 | 352-356 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T427 | 376-380 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T428 | 641-651 | Body_part | denotes | enterocyte | http://purl.org/sig/ont/fma/fma62122 |
T429 | 673-688 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T430 | 751-762 | Body_part | denotes | enterocytes | http://purl.org/sig/ont/fma/fma62122 |
T431 | 856-866 | Body_part | denotes | enterocyte | http://purl.org/sig/ont/fma/fma62122 |
T432 | 888-903 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T433 | 965-976 | Body_part | denotes | enterocytes | http://purl.org/sig/ont/fma/fma62122 |
T434 | 1123-1127 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T435 | 1137-1140 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T436 | 1154-1169 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T437 | 1222-1226 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T438 | 1302-1317 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
T439 | 1394-1398 | Body_part | denotes | Gene | http://purl.org/sig/ont/fma/fma74402 |
T440 | 1441-1444 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T441 | 1472-1487 | Body_part | denotes | small intestine | http://purl.org/sig/ont/fma/fma7200 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T170 | 95-111 | Body_part | denotes | small intestinal | http://purl.obolibrary.org/obo/UBERON_0002108 |
T171 | 257-272 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T172 | 263-272 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T173 | 673-688 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T174 | 679-688 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T175 | 888-903 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T176 | 894-903 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T177 | 1154-1169 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T178 | 1160-1169 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T179 | 1302-1317 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T180 | 1308-1317 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T181 | 1472-1487 | Body_part | denotes | small intestine | http://purl.obolibrary.org/obo/UBERON_0002108 |
T182 | 1478-1487 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
99 | 939-943 | Chemical | denotes | DPP4 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T639 | 39-40 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T640 | 95-111 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestinal |
T641 | 126-127 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T642 | 176-180 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T643 | 217-222 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
T644 | 226-227 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T645 | 257-272 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T646 | 278-282 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T647 | 344-345 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T648 | 352-356 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T649 | 376-380 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T650 | 435-436 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T651 | 438-443 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Genes |
T652 | 546-547 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T653 | 673-688 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T654 | 888-903 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T655 | 1123-1127 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T656 | 1148-1153 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T657 | 1154-1169 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T658 | 1172-1173 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T659 | 1222-1226 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T660 | 1263-1268 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
T661 | 1272-1273 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T662 | 1296-1301 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T663 | 1302-1317 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
T664 | 1320-1321 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T665 | 1323-1328 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Genes |
T666 | 1394-1398 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Gene |
T667 | 1466-1471 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T668 | 1472-1487 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestine |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T39 | 41-56 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcriptional |
T40 | 176-191 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
T41 | 278-293 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
T42 | 591-606 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | Transcriptional |
T43 | 807-822 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | Transcriptional |
T44 | 1222-1237 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
T45 | 1394-1409 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | Gene expression |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T203 | 0-9 | Sentence | denotes | Figure 5. |
T204 | 11-124 | Sentence | denotes | Coronavirus receptors share a transcriptional signature correlated to maturation of small intestinal enterocytes. |
T205 | 125-273 | Sentence | denotes | (A) Distribution of cosine similarity between the ‘gene expression vectors’ of ACE2 and all genes in a scRNAseq study of the murine small intestine. |
T206 | 274-689 | Sentence | denotes | The gene expression vector corresponds to the set of CP10K values for a given gene in each individual cell from the selected populations in the selected study. (B) Genes similar to ACE2 (cosine similarity >0.4) sorted by literature-derivation association. Arrow indicates a sort option available on the platform. (C) Transcriptional expression of ANPEP correlated to enterocyte maturation in murine small intestine. |
T207 | 690-904 | Sentence | denotes | Violin plots show distribution of ANPEP expression levels in enterocytes at different stages of differentiation. (D) Transcriptional expression of DPP4 correlated to enterocyte maturation in murine small intestine. |
T208 | 905-1016 | Sentence | denotes | Violin plots show distribution of DPP4 expression levels in enterocytes at different stages of differentiation. |
T209 | 1017-1046 | Sentence | denotes | Figure 5—figure supplement 1. |
T210 | 1048-1170 | Sentence | denotes | Coronavirus receptors show highly correlated expression patterns by single cell and bulk RNA-seq in human small intestine. |
T211 | 1171-1496 | Sentence | denotes | (A) Distribution of cosine similarity between the ‘gene expression vectors’ of ACE2 and all genes in a scRNAseq study of the human small intestine. (B) Genes similar to ACE2 sorted by literature-derivation association. (C) Gene expression correlations to ACE2 from bulk RNA-sequencing (GTEx) of human small intestine samples. |