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PMC:7371427 / 22062-22913 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T259 35-40 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T260 48-53 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T261 56-78 Body_part denotes pancreatic alpha cells http://purl.org/sig/ont/fma/fma70585
T262 73-78 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T263 84-97 Body_part denotes keratinocytes http://purl.org/sig/ont/fma/fma62879
T264 340-344 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T265 515-520 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T266 544-561 Body_part denotes pancreatic islets http://purl.org/sig/ont/fma/fma76489

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T454 35-40 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T455 48-53 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T456 73-78 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T457 84-97 http://purl.obolibrary.org/obo/CL_0000312 denotes keratinocytes
T458 236-237 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T459 340-350 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T460 452-456 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T461 515-520 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T462 538-543 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T463 544-561 http://purl.obolibrary.org/obo/UBERON_0000006 denotes pancreatic islets
T464 820-827 http://purl.obolibrary.org/obo/SO_0000418 denotes signals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T39 12-34 Chemical denotes pancreatic polypeptide http://purl.obolibrary.org/obo/CHEBI_80329
T40 23-34 Chemical denotes polypeptide http://purl.obolibrary.org/obo/CHEBI_15841
T41 42-47 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T42 67-72 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T43 500-505 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T44 509-514 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T20 762-771 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T21 809-827 http://purl.obolibrary.org/obo/GO_0023052 denotes biological signals

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T135 0-202 Sentence denotes Conversely, pancreatic polypeptide cells (gamma cells), pancreatic alpha cells, and keratinocytes show similarly robust ACE2 expression but have not been strongly associated with ACE2 in the literature.
T136 203-285 Sentence denotes This combination suggests either a biological novelty or an experimental artifact.
T137 286-659 Sentence denotes We note that the strong ACE2 expression in pancreatic cell types is derived from only one murine study (Figure 2—figure supplement 1; Tabula Muris Consortium et al., 2018), while ACE2 expression is not observed in gamma or alpha cells from scRNAseq of human pancreatic islets (Figure 2—figure supplement 1; Segerstolpe et al., 2016; Grün et al., 2016; Muraro et al., 2016).
T138 660-851 Sentence denotes While we cannot determine the validity of either observation, this example demonstrates how knowledge synthesis can automatically surface discordant biological signals for further evaluation.

MyTest

Id Subject Object Predicate Lexical cue
32463365-30283141-27519104 452-456 30283141 denotes 2018
32463365-27667667-27519105 613-617 27667667 denotes 2016
32463365-27345837-27519106 632-636 27345837 denotes 2016
32463365-27693023-27519107 653-657 27693023 denotes 2016

2_test

Id Subject Object Predicate Lexical cue
32463365-30283141-27519104 452-456 30283141 denotes 2018
32463365-27667667-27519105 613-617 27667667 denotes 2016
32463365-27345837-27519106 632-636 27345837 denotes 2016
32463365-27693023-27519107 653-657 27693023 denotes 2016