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PMC:7361216 / 3102-3786 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T34 37-43 Body_part denotes myelin http://purl.org/sig/ont/fma/fma62977
T35 55-67 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T36 193-196 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T37 197-205 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T38 268-280 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 357-376 Body_part denotes natural killer cell http://purl.org/sig/ont/fma/fma63147
T40 372-376 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T41 437-457 Body_part denotes natural killer cells http://purl.org/sig/ont/fma/fma63147
T42 452-457 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T43 475-481 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T44 483-489 Body_part denotes retina http://purl.org/sig/ont/fma/fma58301
T45 491-496 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T46 498-506 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T47 654-676 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T48 677-683 Body_part denotes myelin http://purl.org/sig/ont/fma/fma62977

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 37-43 Body_part denotes myelin http://purl.obolibrary.org/obo/UBERON_0000345
T16 475-481 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T17 483-489 Body_part denotes retina http://purl.obolibrary.org/obo/UBERON_0000966
T18 491-496 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T19 517-533 Body_part denotes proximal tubules http://purl.obolibrary.org/obo/UBERON_0004134
T20 654-676 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T21 662-676 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016
T22 677-683 Body_part denotes myelin http://purl.obolibrary.org/obo/UBERON_0000345

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 16-26 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T10 222-243 Disease denotes monoclonal gammopathy http://purl.obolibrary.org/obo/MONDO_0004960

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 74-77 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T40 219-220 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 255-256 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 351-356 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T43 357-376 http://purl.obolibrary.org/obo/CL_0000623 denotes natural killer cell
T44 380-385 http://purl.obolibrary.org/obo/CLO_0003789 denotes HNK‐1
T45 392-397 http://purl.obolibrary.org/obo/CLO_0003789 denotes HNK‐1
T46 437-457 http://purl.obolibrary.org/obo/CL_0000623 denotes natural killer cells
T47 459-474 http://purl.obolibrary.org/obo/UBERON_0002346 denotes neuroectodermal
T48 483-489 http://purl.obolibrary.org/obo/UBERON_0000966 denotes retina
T49 491-496 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T50 491-496 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T51 517-533 http://purl.obolibrary.org/obo/UBERON_0004134 denotes proximal tubules
T52 567-568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 654-676 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T54 654-676 http://www.ebi.ac.uk/efo/EFO_0000302 denotes central nervous system
T55 654-676 http://www.ebi.ac.uk/efo/EFO_0000908 denotes central nervous system

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T27 55-67 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T28 268-280 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T29 315-322 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T30 398-405 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T31 579-590 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T32 586-590 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T12 159-166 http://purl.obolibrary.org/obo/OGMS_0000031 denotes disease
T13 176-186 http://purl.obolibrary.org/obo/IDO_0000607 denotes production
T14 372-376 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T15 452-457 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T24 55-67 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T25 268-280 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T26 579-590 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T7 351-356 Species denotes human NCBItxid:9606

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T19 0-150 Sentence denotes A demyelinating neuropathy targeting myelin‐associated glycoprotein (MAG) has an incidence of approximately one per 100,000 (Mygland & Monstad, 2001).
T20 151-387 Sentence denotes In this disease there is production of an IgM antibody resulting in a “monoclonal gammopathy” targeting a particular carbohydrate known as Cellular Differentiation antigen 57 (CD57) and also known as human natural killer cell‐1 (HNK‐1).
T21 388-550 Sentence denotes The HNK‐1 antigen is found on MAG, as well as on natural killer cells, neuroectodermal tissue, retina, brain, prostate and renal proximal tubules (Pernick, 2019).
T22 551-684 Sentence denotes CD57 belongs to a family of sialic acid‐binding Ig‐like lectins (siglecs) found on both peripheral and central nervous system myelin.

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T11 37-43 Body_part denotes myelin http://purl.obolibrary.org/obo/UBERON_0000345
T12 475-481 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T13 483-489 Body_part denotes retina http://purl.obolibrary.org/obo/UBERON_0000966
T14 491-496 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T15 517-533 Body_part denotes proximal tubules http://purl.obolibrary.org/obo/UBERON_0004134
T16 654-676 Body_part denotes central nervous system http://purl.obolibrary.org/obo/UBERON_0001017
T17 677-683 Body_part denotes myelin http://purl.obolibrary.org/obo/UBERON_0000345

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
90 2-26 Disease denotes demyelinating neuropathy MESH:D003711
82 37-67 Gene denotes myelin‐associated glycoprotein Gene:4099
85 69-72 Gene denotes MAG Gene:4099
88 268-280 Chemical denotes carbohydrate MESH:D002241
87 351-356 Species denotes human Tax:9606
83 380-385 Gene denotes HNK‐1 Gene:27087
84 392-397 Gene denotes HNK‐1 Gene:27087
86 418-421 Gene denotes MAG Gene:4099
89 579-590 Chemical denotes sialic acid MESH:D019158
91 654-683 Disease denotes central nervous system myelin MESH:D020278

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T34 37-67 Protein denotes myelin‐associated glycoprotein https://www.uniprot.org/uniprot/Q567S4|https://www.uniprot.org/uniprot/Q15489|https://www.uniprot.org/uniprot/P20917|https://www.uniprot.org/uniprot/P20916|https://www.uniprot.org/uniprot/P16880|https://www.uniprot.org/uniprot/P07723|https://www.uniprot.org/uniprot/P07722|https://www.uniprot.org/uniprot/P02685|https://www.uniprot.org/uniprot/F5GYC0|https://www.uniprot.org/uniprot/B7Z2E5|https://www.uniprot.org/uniprot/A0A087WPR1
T45 69-72 Protein denotes MAG https://www.uniprot.org/uniprot/Q567S4
T46 418-421 Protein denotes MAG https://www.uniprot.org/uniprot/Q567S4

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T34 37-43 Body_part denotes myelin http://purl.org/sig/ont/fma/fma62977
T35 55-67 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T36 193-196 Body_part denotes IgM http://purl.org/sig/ont/fma/fma62873
T37 197-205 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T38 268-280 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T39 357-376 Body_part denotes natural killer cell http://purl.org/sig/ont/fma/fma63147
T40 372-376 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T41 437-457 Body_part denotes natural killer cells http://purl.org/sig/ont/fma/fma63147
T42 452-457 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T43 475-481 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T44 483-489 Body_part denotes retina http://purl.org/sig/ont/fma/fma58301
T45 491-496 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T46 498-506 Body_part denotes prostate http://purl.org/sig/ont/fma/fma9600
T47 654-676 Body_part denotes central nervous system http://purl.org/sig/ont/fma/fma55675
T48 677-683 Body_part denotes myelin http://purl.org/sig/ont/fma/fma62977

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T3 483-489 http://purl.obolibrary.org/obo/MAT_0000142 denotes retina
T4 491-496 http://purl.obolibrary.org/obo/MAT_0000098 denotes brain
T5 498-506 http://purl.obolibrary.org/obo/MAT_0000078 denotes prostate
T6 517-525 http://purl.obolibrary.org/obo/MAT_0000491 denotes proximal
T7 654-676 http://purl.obolibrary.org/obo/MAT_0000457 denotes central nervous system
T8 662-676 http://purl.obolibrary.org/obo/MAT_0000026 denotes nervous system

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T4 654-683 http://purl.obolibrary.org/obo/GO_0022010 denotes central nervous system myelin

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 16-26 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T13 222-243 Disease denotes monoclonal gammopathy http://purl.obolibrary.org/obo/MONDO_0004960

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 2-15 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T3 16-26 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 2-15 Phenotype denotes demyelinating http://purl.obolibrary.org/obo/HP_0011096
T3 16-26 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T5 654-683 http://purl.obolibrary.org/obo/GO_0022010 denotes central nervous system myelin

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 654-683 http://purl.obolibrary.org/obo/GO_0022010 denotes central nervous system myelin

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-150 Sentence denotes A demyelinating neuropathy targeting myelin‐associated glycoprotein (MAG) has an incidence of approximately one per 100,000 (Mygland & Monstad, 2001).
T20 151-387 Sentence denotes In this disease there is production of an IgM antibody resulting in a “monoclonal gammopathy” targeting a particular carbohydrate known as Cellular Differentiation antigen 57 (CD57) and also known as human natural killer cell‐1 (HNK‐1).
T21 388-550 Sentence denotes The HNK‐1 antigen is found on MAG, as well as on natural killer cells, neuroectodermal tissue, retina, brain, prostate and renal proximal tubules (Pernick, 2019).
T22 551-684 Sentence denotes CD57 belongs to a family of sialic acid‐binding Ig‐like lectins (siglecs) found on both peripheral and central nervous system myelin.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
82 37-67 Gene denotes myelin‐associated glycoprotein Gene:4099
83 380-385 Gene denotes HNK‐1 Gene:27087
84 392-397 Gene denotes HNK‐1 Gene:27087
85 69-72 Gene denotes MAG Gene:4099
86 418-421 Gene denotes MAG Gene:4099
87 351-356 Species denotes human Tax:9606
88 268-280 Chemical denotes carbohydrate MESH:D002241
89 579-590 Chemical denotes sialic acid MESH:D019158
90 2-26 Disease denotes demyelinating neuropathy MESH:D003711
91 654-683 Disease denotes central nervous system myelin MESH:D020278