PMC:7354481 / 24324-25702
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7354481","sourcedb":"PMC","sourceid":"7354481","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7354481","text":"Recently, the N nucleocapsid gene-related putative miR candidates were shown through in silico prediction tools [38]. In a similar manner, we determined miR-8066, a mature sequence found on SARS-CoV-2 genomes, in SARS-CoV-2 genome alignment analysis with human miRs. Additionally, miR-8067, which possesses a similar biological role to miR-8066, was identified as a stem loop region sequence in all SARS-CoV-2 genomes (Figure S1). Previous reports showed that both miRs are found in plasma samples of sepsis patients with severe clinical outcomes [39]. Similar miR family members such as miR-8054, miR-8057, miR-8061, and miR-8068, were also found in a non-survivor group of sepsis patients. It has been shown by in silico analysis that certain miRNAs have the core motifs of AUUGUUG, and that miR-8066 is one of these [40]. When miRs have this motif, it increases their likelihood to bind and activate Nf κB-mediated TLR-8 expression and induce cytokine synthesis [40]. miR-8066 was identified at high levels in tissue biopsies as well as in exosomes [41]. Therefore, SARS-CoV-2-mediated alterations of miRs may act as autocrine or paracrine agonists of host cells to trigger pro-inflammatory cytokines, due to their increased NfKB activity [42]. Similar findings were also suggested for cancer cells, which showed miR alterations in association with inflammation markers [43].","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T145","span":{"begin":29,"end":33},"obj":"Body_part"},{"id":"T146","span":{"begin":201,"end":208},"obj":"Body_part"},{"id":"T147","span":{"begin":224,"end":230},"obj":"Body_part"},{"id":"T148","span":{"begin":410,"end":417},"obj":"Body_part"},{"id":"T149","span":{"begin":483,"end":489},"obj":"Body_part"},{"id":"T150","span":{"begin":946,"end":954},"obj":"Body_part"},{"id":"T151","span":{"begin":1013,"end":1019},"obj":"Body_part"},{"id":"T152","span":{"begin":1160,"end":1165},"obj":"Body_part"},{"id":"T153","span":{"begin":1194,"end":1203},"obj":"Body_part"},{"id":"T154","span":{"begin":1296,"end":1301},"obj":"Body_part"}],"attributes":[{"id":"A145","pred":"fma_id","subj":"T145","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A146","pred":"fma_id","subj":"T146","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A147","pred":"fma_id","subj":"T147","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A148","pred":"fma_id","subj":"T148","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A149","pred":"fma_id","subj":"T149","obj":"http://purl.org/sig/ont/fma/fma62970"},{"id":"A150","pred":"fma_id","subj":"T150","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A151","pred":"fma_id","subj":"T151","obj":"http://purl.org/sig/ont/fma/fma9637"},{"id":"A152","pred":"fma_id","subj":"T152","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A153","pred":"fma_id","subj":"T153","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A154","pred":"fma_id","subj":"T154","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T145","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T146","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T147","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T148","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T149","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T150","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T151","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T152","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T153","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T154","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T18","span":{"begin":1013,"end":1019},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T90","span":{"begin":190,"end":198},"obj":"Disease"},{"id":"T91","span":{"begin":213,"end":221},"obj":"Disease"},{"id":"T92","span":{"begin":399,"end":407},"obj":"Disease"},{"id":"T93","span":{"begin":1069,"end":1077},"obj":"Disease"},{"id":"T94","span":{"begin":1289,"end":1295},"obj":"Disease"},{"id":"T95","span":{"begin":1352,"end":1364},"obj":"Disease"}],"attributes":[{"id":"A90","pred":"mondo_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A91","pred":"mondo_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A94","pred":"mondo_id","subj":"T94","obj":"http://purl.obolibrary.org/obo/MONDO_0004992"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0021166"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T95","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T235","span":{"begin":29,"end":33},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T236","span":{"begin":121,"end":122},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T237","span":{"begin":163,"end":164},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T238","span":{"begin":255,"end":260},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T239","span":{"begin":307,"end":308},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T240","span":{"begin":364,"end":365},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T241","span":{"begin":426,"end":428},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T242","span":{"begin":483,"end":489},"obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"id":"T243","span":{"begin":651,"end":652},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T244","span":{"begin":695,"end":698},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T245","span":{"begin":894,"end":902},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T246","span":{"begin":907,"end":908},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T247","span":{"begin":1053,"end":1055},"obj":"http://purl.obolibrary.org/obo/CLO_0053794"},{"id":"T248","span":{"begin":1160,"end":1165},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T249","span":{"begin":1233,"end":1241},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T250","span":{"begin":1296,"end":1301},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T235","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T236","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T237","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T238","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T239","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T240","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T241","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T242","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T243","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T244","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T245","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T246","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T247","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T248","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T249","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T250","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T57","span":{"begin":317,"end":332},"obj":"Chemical"},{"id":"T58","span":{"begin":666,"end":671},"obj":"Chemical"},{"id":"T59","span":{"begin":1143,"end":1151},"obj":"Chemical"}],"attributes":[{"id":"A57","pred":"chebi_id","subj":"T57","obj":"http://purl.obolibrary.org/obo/CHEBI_24432"},{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"},{"id":"A59","pred":"chebi_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/CHEBI_48705"},{"subj":"T57","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T59","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T21","span":{"begin":501,"end":507},"obj":"Phenotype"},{"id":"T22","span":{"begin":675,"end":681},"obj":"Phenotype"},{"id":"T23","span":{"begin":1289,"end":1295},"obj":"Phenotype"}],"attributes":[{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T68","span":{"begin":955,"end":964},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T69","span":{"begin":1352,"end":1364},"obj":"http://purl.obolibrary.org/obo/GO_0006954"}],"attributes":[{"subj":"T68","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T69","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T167","span":{"begin":0,"end":117},"obj":"Sentence"},{"id":"T168","span":{"begin":118,"end":266},"obj":"Sentence"},{"id":"T169","span":{"begin":267,"end":430},"obj":"Sentence"},{"id":"T170","span":{"begin":431,"end":552},"obj":"Sentence"},{"id":"T171","span":{"begin":553,"end":691},"obj":"Sentence"},{"id":"T172","span":{"begin":692,"end":824},"obj":"Sentence"},{"id":"T173","span":{"begin":825,"end":1057},"obj":"Sentence"},{"id":"T174","span":{"begin":1058,"end":1247},"obj":"Sentence"},{"id":"T175","span":{"begin":1248,"end":1378},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T167","pred":"source","obj":"LitCovid-sentences"},{"subj":"T168","pred":"source","obj":"LitCovid-sentences"},{"subj":"T169","pred":"source","obj":"LitCovid-sentences"},{"subj":"T170","pred":"source","obj":"LitCovid-sentences"},{"subj":"T171","pred":"source","obj":"LitCovid-sentences"},{"subj":"T172","pred":"source","obj":"LitCovid-sentences"},{"subj":"T173","pred":"source","obj":"LitCovid-sentences"},{"subj":"T174","pred":"source","obj":"LitCovid-sentences"},{"subj":"T175","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32512929-27320175-144200722","span":{"begin":820,"end":822},"obj":"27320175"},{"id":"32512929-27320175-144200723","span":{"begin":966,"end":968},"obj":"27320175"},{"id":"32512929-31867014-144200724","span":{"begin":1053,"end":1055},"obj":"31867014"},{"id":"32512929-31597886-144200725","span":{"begin":1243,"end":1245},"obj":"31597886"},{"id":"32512929-23805154-144200726","span":{"begin":1374,"end":1376},"obj":"23805154"}],"attributes":[{"subj":"32512929-27320175-144200722","pred":"source","obj":"2_test"},{"subj":"32512929-27320175-144200723","pred":"source","obj":"2_test"},{"subj":"32512929-31867014-144200724","pred":"source","obj":"2_test"},{"subj":"32512929-31597886-144200725","pred":"source","obj":"2_test"},{"subj":"32512929-23805154-144200726","pred":"source","obj":"2_test"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"430","span":{"begin":51,"end":54},"obj":"Gene"},{"id":"431","span":{"begin":153,"end":161},"obj":"Gene"},{"id":"432","span":{"begin":281,"end":289},"obj":"Gene"},{"id":"433","span":{"begin":336,"end":344},"obj":"Gene"},{"id":"434","span":{"begin":588,"end":596},"obj":"Gene"},{"id":"435","span":{"begin":598,"end":606},"obj":"Gene"},{"id":"436","span":{"begin":608,"end":616},"obj":"Gene"},{"id":"437","span":{"begin":622,"end":630},"obj":"Gene"},{"id":"438","span":{"begin":794,"end":802},"obj":"Gene"},{"id":"439","span":{"begin":903,"end":908},"obj":"Gene"},{"id":"440","span":{"begin":918,"end":923},"obj":"Gene"},{"id":"441","span":{"begin":971,"end":979},"obj":"Gene"},{"id":"442","span":{"begin":14,"end":15},"obj":"Gene"},{"id":"443","span":{"begin":190,"end":200},"obj":"Species"},{"id":"444","span":{"begin":213,"end":223},"obj":"Species"},{"id":"445","span":{"begin":255,"end":260},"obj":"Species"},{"id":"446","span":{"begin":399,"end":409},"obj":"Species"},{"id":"447","span":{"begin":508,"end":516},"obj":"Species"},{"id":"448","span":{"begin":682,"end":690},"obj":"Species"},{"id":"449","span":{"begin":1069,"end":1079},"obj":"Species"},{"id":"450","span":{"begin":501,"end":507},"obj":"Disease"},{"id":"451","span":{"begin":675,"end":681},"obj":"Disease"},{"id":"452","span":{"begin":1289,"end":1295},"obj":"Disease"},{"id":"453","span":{"begin":1352,"end":1364},"obj":"Disease"}],"attributes":[{"id":"A431","pred":"tao:has_database_id","subj":"431","obj":"Gene:102465868"},{"id":"A432","pred":"tao:has_database_id","subj":"432","obj":"Gene:102465869"},{"id":"A433","pred":"tao:has_database_id","subj":"433","obj":"Gene:102465868"},{"id":"A434","pred":"tao:has_database_id","subj":"434","obj":"Gene:102465860"},{"id":"A435","pred":"tao:has_database_id","subj":"435","obj":"Gene:102466874"},{"id":"A436","pred":"tao:has_database_id","subj":"436","obj":"Gene:102466251"},{"id":"A437","pred":"tao:has_database_id","subj":"437","obj":"Gene:102466876"},{"id":"A438","pred":"tao:has_database_id","subj":"438","obj":"Gene:102465868"},{"id":"A439","pred":"tao:has_database_id","subj":"439","obj":"Gene:4790"},{"id":"A440","pred":"tao:has_database_id","subj":"440","obj":"Gene:51311"},{"id":"A441","pred":"tao:has_database_id","subj":"441","obj":"Gene:102465868"},{"id":"A442","pred":"tao:has_database_id","subj":"442","obj":"Gene:43740575"},{"id":"A443","pred":"tao:has_database_id","subj":"443","obj":"Tax:2697049"},{"id":"A444","pred":"tao:has_database_id","subj":"444","obj":"Tax:2697049"},{"id":"A445","pred":"tao:has_database_id","subj":"445","obj":"Tax:9606"},{"id":"A446","pred":"tao:has_database_id","subj":"446","obj":"Tax:2697049"},{"id":"A447","pred":"tao:has_database_id","subj":"447","obj":"Tax:9606"},{"id":"A448","pred":"tao:has_database_id","subj":"448","obj":"Tax:9606"},{"id":"A449","pred":"tao:has_database_id","subj":"449","obj":"Tax:2697049"},{"id":"A450","pred":"tao:has_database_id","subj":"450","obj":"MESH:D018805"},{"id":"A451","pred":"tao:has_database_id","subj":"451","obj":"MESH:D018805"},{"id":"A452","pred":"tao:has_database_id","subj":"452","obj":"MESH:D009369"},{"id":"A453","pred":"tao:has_database_id","subj":"453","obj":"MESH:D007249"},{"subj":"430","pred":"source","obj":"LitCovid-PubTator"},{"subj":"431","pred":"source","obj":"LitCovid-PubTator"},{"subj":"432","pred":"source","obj":"LitCovid-PubTator"},{"subj":"433","pred":"source","obj":"LitCovid-PubTator"},{"subj":"434","pred":"source","obj":"LitCovid-PubTator"},{"subj":"435","pred":"source","obj":"LitCovid-PubTator"},{"subj":"436","pred":"source","obj":"LitCovid-PubTator"},{"subj":"437","pred":"source","obj":"LitCovid-PubTator"},{"subj":"438","pred":"source","obj":"LitCovid-PubTator"},{"subj":"439","pred":"source","obj":"LitCovid-PubTator"},{"subj":"440","pred":"source","obj":"LitCovid-PubTator"},{"subj":"441","pred":"source","obj":"LitCovid-PubTator"},{"subj":"442","pred":"source","obj":"LitCovid-PubTator"},{"subj":"443","pred":"source","obj":"LitCovid-PubTator"},{"subj":"444","pred":"source","obj":"LitCovid-PubTator"},{"subj":"445","pred":"source","obj":"LitCovid-PubTator"},{"subj":"446","pred":"source","obj":"LitCovid-PubTator"},{"subj":"447","pred":"source","obj":"LitCovid-PubTator"},{"subj":"448","pred":"source","obj":"LitCovid-PubTator"},{"subj":"449","pred":"source","obj":"LitCovid-PubTator"},{"subj":"450","pred":"source","obj":"LitCovid-PubTator"},{"subj":"451","pred":"source","obj":"LitCovid-PubTator"},{"subj":"452","pred":"source","obj":"LitCovid-PubTator"},{"subj":"453","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#d793ec","default":true},{"id":"LitCovid-PD-UBERON","color":"#93ecbc"},{"id":"LitCovid-PD-MONDO","color":"#eca293"},{"id":"LitCovid-PD-CLO","color":"#939dec"},{"id":"LitCovid-PD-CHEBI","color":"#b7ec93"},{"id":"LitCovid-PD-HP","color":"#ec93d1"},{"id":"LitCovid-PD-GO-BP","color":"#93ebec"},{"id":"LitCovid-sentences","color":"#ecd393"},{"id":"2_test","color":"#b993ec"},{"id":"LitCovid-PubTator","color":"#93ec9f"}]}]}}