PMC:7354481 / 20421-21237
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T118 | 355-365 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
T119 | 412-416 | Body_part | denotes | Gene | http://purl.org/sig/ont/fma/fma74402 |
T120 | 467-472 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
T121 | 549-553 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T122 | 632-648 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
T123 | 643-648 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T124 | 658-662 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T125 | 670-674 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T13 | 658-662 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T72 | 20-28 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T73 | 223-227 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T74 | 269-277 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T75 | 480-488 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T76 | 491-500 | Disease | denotes | Infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T77 | 584-592 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T78 | 604-613 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T79 | 658-669 | Disease | denotes | lung cancer | http://purl.obolibrary.org/obo/MONDO_0008903 |
T80 | 663-669 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T167 | 249-251 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T168 | 412-416 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | Gene |
T169 | 447-457 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | Epithelial |
T170 | 462-466 | http://purl.obolibrary.org/obo/CLO_0001601 | denotes | A549 |
T171 | 462-466 | http://purl.obolibrary.org/obo/CLO_0050025 | denotes | A549 |
T172 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054264 | denotes | A549 |
T173 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054265 | denotes | A549 |
T174 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054266 | denotes | A549 |
T175 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054267 | denotes | A549 |
T176 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054268 | denotes | A549 |
T177 | 462-466 | http://purl.obolibrary.org/obo/CLO_0054269 | denotes | A549 |
T178 | 467-472 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
T179 | 549-553 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T180 | 632-642 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
T181 | 643-648 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T182 | 653-657 | http://purl.obolibrary.org/obo/CLO_0001601 | denotes | A549 |
T183 | 653-657 | http://purl.obolibrary.org/obo/CLO_0050025 | denotes | A549 |
T184 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054264 | denotes | A549 |
T185 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054265 | denotes | A549 |
T186 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054266 | denotes | A549 |
T187 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054267 | denotes | A549 |
T188 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054268 | denotes | A549 |
T189 | 653-657 | http://purl.obolibrary.org/obo/CLO_0054269 | denotes | A549 |
T190 | 658-662 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T191 | 658-662 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T192 | 663-680 | http://purl.obolibrary.org/obo/OBI_0001906 | denotes | cancer cell lines |
T193 | 663-680 | http://www.ebi.ac.uk/cellline#cancer_cell_line | denotes | cancer cell lines |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T55 | 355-365 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T20 | 658-669 | Phenotype | denotes | lung cancer | http://purl.obolibrary.org/obo/HP_0100526 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T59 | 549-564 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T139 | 167-393 | Sentence | denotes | The comparison of depicted miR sequences from different SARS-Cov-2 strains (Table S1), with the Wuhan SARS-CoV-2 (HCOV-19/WUHAN/WH01/2019|EPI_ISL_406798|2019-12-26), was analyzed by BLAST nucleotide search with default values. |
T140 | 395-399 | Sentence | denotes | 3.2. |
T141 | 400-500 | Sentence | denotes | Analysis of Gene Alterations in NHEB Bronchial Epithelial and A549 Cells Due to SARS-CoV-2 Infection |
T142 | 501-681 | Sentence | denotes | In the final part of the study, we analyzed the gene expression alterations due to SARS-CoV-2-mediated infection in NHEB bronchial epithelial cells and A549 lung cancer cell lines. |
T143 | 682-813 | Sentence | denotes | For this purpose, we used the Bioproject PRJNA615032 publicly available data with the Rosalind bioinformatics data analysis server. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
358 | 20-30 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
359 | 223-233 | Species | denotes | SARS-Cov-2 | Tax:2697049 |
360 | 269-279 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
361 | 281-288 | Species | denotes | HCOV-19 | Tax:2697049 |
364 | 480-500 | Disease | denotes | SARS-CoV-2 Infection | MESH:C000657245 |
365 | 462-466 | CellLine | denotes | A549 | CVCL:0023 |
370 | 584-594 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
371 | 604-613 | Disease | denotes | infection | MESH:D007239 |
372 | 658-669 | Disease | denotes | lung cancer | MESH:D008175 |
373 | 653-657 | CellLine | denotes | A549 | CVCL:0023 |