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PMC:7354481 / 20421-21237 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T118 355-365 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T119 412-416 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T120 467-472 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T121 549-553 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T122 632-648 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T123 643-648 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T124 658-662 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T125 670-674 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T13 658-662 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T72 20-28 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T73 223-227 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 269-277 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 480-488 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 491-500 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 584-592 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 604-613 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 658-669 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T80 663-669 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T167 249-251 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T168 412-416 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T169 447-457 http://purl.obolibrary.org/obo/CL_0000066 denotes Epithelial
T170 462-466 http://purl.obolibrary.org/obo/CLO_0001601 denotes A549
T171 462-466 http://purl.obolibrary.org/obo/CLO_0050025 denotes A549
T172 462-466 http://purl.obolibrary.org/obo/CLO_0054264 denotes A549
T173 462-466 http://purl.obolibrary.org/obo/CLO_0054265 denotes A549
T174 462-466 http://purl.obolibrary.org/obo/CLO_0054266 denotes A549
T175 462-466 http://purl.obolibrary.org/obo/CLO_0054267 denotes A549
T176 462-466 http://purl.obolibrary.org/obo/CLO_0054268 denotes A549
T177 462-466 http://purl.obolibrary.org/obo/CLO_0054269 denotes A549
T178 467-472 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T179 549-553 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T180 632-642 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T181 643-648 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T182 653-657 http://purl.obolibrary.org/obo/CLO_0001601 denotes A549
T183 653-657 http://purl.obolibrary.org/obo/CLO_0050025 denotes A549
T184 653-657 http://purl.obolibrary.org/obo/CLO_0054264 denotes A549
T185 653-657 http://purl.obolibrary.org/obo/CLO_0054265 denotes A549
T186 653-657 http://purl.obolibrary.org/obo/CLO_0054266 denotes A549
T187 653-657 http://purl.obolibrary.org/obo/CLO_0054267 denotes A549
T188 653-657 http://purl.obolibrary.org/obo/CLO_0054268 denotes A549
T189 653-657 http://purl.obolibrary.org/obo/CLO_0054269 denotes A549
T190 658-662 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T191 658-662 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T192 663-680 http://purl.obolibrary.org/obo/OBI_0001906 denotes cancer cell lines
T193 663-680 http://www.ebi.ac.uk/cellline#cancer_cell_line denotes cancer cell lines

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T55 355-365 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 658-669 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T59 549-564 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T139 167-393 Sentence denotes The comparison of depicted miR sequences from different SARS-Cov-2 strains (Table S1), with the Wuhan SARS-CoV-2 (HCOV-19/WUHAN/WH01/2019|EPI_ISL_406798|2019-12-26), was analyzed by BLAST nucleotide search with default values.
T140 395-399 Sentence denotes 3.2.
T141 400-500 Sentence denotes Analysis of Gene Alterations in NHEB Bronchial Epithelial and A549 Cells Due to SARS-CoV-2 Infection
T142 501-681 Sentence denotes In the final part of the study, we analyzed the gene expression alterations due to SARS-CoV-2-mediated infection in NHEB bronchial epithelial cells and A549 lung cancer cell lines.
T143 682-813 Sentence denotes For this purpose, we used the Bioproject PRJNA615032 publicly available data with the Rosalind bioinformatics data analysis server.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
358 20-30 Species denotes SARS-CoV-2 Tax:2697049
359 223-233 Species denotes SARS-Cov-2 Tax:2697049
360 269-279 Species denotes SARS-CoV-2 Tax:2697049
361 281-288 Species denotes HCOV-19 Tax:2697049
364 480-500 Disease denotes SARS-CoV-2 Infection MESH:C000657245
365 462-466 CellLine denotes A549 CVCL:0023
370 584-594 Species denotes SARS-CoV-2 Tax:2697049
371 604-613 Disease denotes infection MESH:D007239
372 658-669 Disease denotes lung cancer MESH:D008175
373 653-657 CellLine denotes A549 CVCL:0023