PMC:7354481 / 13947-14216 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7354481","sourcedb":"PMC","sourceid":"7354481","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7354481","text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T81","span":{"begin":84,"end":90},"obj":"Body_part"}],"attributes":[{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma84116"},{"subj":"T81","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T54","span":{"begin":113,"end":117},"obj":"Disease"}],"attributes":[{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0010408"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T132","span":{"begin":71,"end":83},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T133","span":{"begin":119,"end":121},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"}],"attributes":[{"subj":"T132","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T133","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T96","span":{"begin":45,"end":123},"obj":"Sentence"},{"id":"T97","span":{"begin":124,"end":258},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T96","pred":"source","obj":"LitCovid-sentences"},{"subj":"T97","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32512929-23104886-144200715","span":{"begin":177,"end":179},"obj":"23104886"},{"id":"32512929-25260700-144200716","span":{"begin":254,"end":256},"obj":"25260700"}],"attributes":[{"subj":"32512929-23104886-144200715","pred":"source","obj":"2_test"},{"subj":"32512929-25260700-144200716","pred":"source","obj":"2_test"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"226","span":{"begin":113,"end":117},"obj":"Gene"},{"id":"229","span":{"begin":71,"end":83},"obj":"Species"}],"attributes":[{"id":"A226","pred":"tao:has_database_id","subj":"226","obj":"Gene:6770"},{"id":"A229","pred":"tao:has_database_id","subj":"229","obj":"Tax:9606"},{"subj":"226","pred":"source","obj":"LitCovid-PubTator"},{"subj":"229","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#e6ec93","default":true},{"id":"LitCovid-PD-MONDO","color":"#d893ec"},{"id":"LitCovid-PD-CLO","color":"#93ecbe"},{"id":"LitCovid-sentences","color":"#eca493"},{"id":"2_test","color":"#939bec"},{"id":"LitCovid-PubTator","color":"#b5ec93"}]}]}}