PMC:7354481 / 13947-14216 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T81","span":{"begin":84,"end":90},"obj":"Body_part"}],"attributes":[{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T54","span":{"begin":113,"end":117},"obj":"Disease"}],"attributes":[{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0010408"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T132","span":{"begin":71,"end":83},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T133","span":{"begin":119,"end":121},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}

{"project":"LitCovid-sentences","denotations":[{"id":"T96","span":{"begin":45,"end":123},"obj":"Sentence"},{"id":"T97","span":{"begin":124,"end":258},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}

{"project":"2_test","denotations":[{"id":"32512929-23104886-144200715","span":{"begin":177,"end":179},"obj":"23104886"},{"id":"32512929-25260700-144200716","span":{"begin":254,"end":256},"obj":"25260700"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}

{"project":"LitCovid-PubTator","denotations":[{"id":"226","span":{"begin":113,"end":117},"obj":"Gene"},{"id":"229","span":{"begin":71,"end":83},"obj":"Species"}],"attributes":[{"id":"A226","pred":"tao:has_database_id","subj":"226","obj":"Gene:6770"},{"id":"A229","pred":"tao:has_database_id","subj":"229","obj":"Tax:9606"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"lity scores were assessed using FastQC [26]. Reads were aligned to the Homo sapiens genome built by GRCh38 using STAR [27]. Individual sample reads were quantified using HTseq [28] and normalized via relative log expression (RLE) using DESeq2 R library [29]. Read distr"}