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LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T48","span":{"begin":500,"end":504},"obj":"Body_part"},{"id":"T49","span":{"begin":1256,"end":1259},"obj":"Body_part"},{"id":"T50","span":{"begin":1314,"end":1317},"obj":"Body_part"},{"id":"T51","span":{"begin":1349,"end":1355},"obj":"Body_part"},{"id":"T52","span":{"begin":1384,"end":1387},"obj":"Body_part"},{"id":"T53","span":{"begin":1389,"end":1399},"obj":"Body_part"},{"id":"T54","span":{"begin":1423,"end":1430},"obj":"Body_part"},{"id":"T55","span":{"begin":1509,"end":1519},"obj":"Body_part"},{"id":"T56","span":{"begin":1759,"end":1777},"obj":"Body_part"},{"id":"T57","span":{"begin":1892,"end":1898},"obj":"Body_part"},{"id":"T58","span":{"begin":1971,"end":1974},"obj":"Body_part"}],"attributes":[{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A50","pred":"fma_id","subj":"T50","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A51","pred":"fma_id","subj":"T51","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A52","pred":"fma_id","subj":"T52","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A53","pred":"fma_id","subj":"T53","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A54","pred":"fma_id","subj":"T54","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A56","pred":"fma_id","subj":"T56","obj":"http://purl.org/sig/ont/fma/fma265130"},{"id":"A57","pred":"fma_id","subj":"T57","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A58","pred":"fma_id","subj":"T58","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":500,"end":504},"obj":"Body_part"},{"id":"T3","span":{"begin":1759,"end":1777},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

LitCovid-PubTator

LitCovid-PD-MONDO

LitCovid-PD-CLO

LitCovid-PD-CHEBI

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T257","span":{"begin":1389,"end":1399},"obj":"Chemical"},{"id":"T258","span":{"begin":1509,"end":1519},"obj":"Chemical"}],"attributes":[{"id":"A257","pred":"chebi_id","subj":"T257","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A258","pred":"chebi_id","subj":"T258","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T66","span":{"begin":0,"end":2},"obj":"Sentence"},{"id":"T67","span":{"begin":3,"end":25},"obj":"Sentence"},{"id":"T68","span":{"begin":26,"end":115},"obj":"Sentence"},{"id":"T69","span":{"begin":116,"end":166},"obj":"Sentence"},{"id":"T70","span":{"begin":167,"end":292},"obj":"Sentence"},{"id":"T71","span":{"begin":293,"end":356},"obj":"Sentence"},{"id":"T72","span":{"begin":357,"end":505},"obj":"Sentence"},{"id":"T73","span":{"begin":506,"end":618},"obj":"Sentence"},{"id":"T74","span":{"begin":619,"end":662},"obj":"Sentence"},{"id":"T75","span":{"begin":663,"end":719},"obj":"Sentence"},{"id":"T76","span":{"begin":720,"end":748},"obj":"Sentence"},{"id":"T77","span":{"begin":749,"end":888},"obj":"Sentence"},{"id":"T78","span":{"begin":889,"end":1094},"obj":"Sentence"},{"id":"T79","span":{"begin":1095,"end":1251},"obj":"Sentence"},{"id":"T80","span":{"begin":1252,"end":1297},"obj":"Sentence"},{"id":"T81","span":{"begin":1298,"end":1388},"obj":"Sentence"},{"id":"T82","span":{"begin":1389,"end":1620},"obj":"Sentence"},{"id":"T83","span":{"begin":1621,"end":1733},"obj":"Sentence"},{"id":"T84","span":{"begin":1734,"end":1812},"obj":"Sentence"},{"id":"T85","span":{"begin":1813,"end":1887},"obj":"Sentence"},{"id":"T86","span":{"begin":1888,"end":2024},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

2_test

{"project":"2_test","denotations":[{"id":"32604730-32469854-51943955","span":{"begin":314,"end":316},"obj":"32469854"},{"id":"32604730-16575523-51943956","span":{"begin":1087,"end":1089},"obj":"16575523"},{"id":"32604730-15034574-51943957","span":{"begin":1090,"end":1092},"obj":"15034574"},{"id":"32604730-31987001-51943958","span":{"begin":1729,"end":1731},"obj":"31987001"},{"id":"32604730-32007145-51943959","span":{"begin":2020,"end":2022},"obj":"32007145"},{"id":"T71467","span":{"begin":314,"end":316},"obj":"32469854"},{"id":"T30962","span":{"begin":1087,"end":1089},"obj":"16575523"},{"id":"T36307","span":{"begin":1090,"end":1092},"obj":"15034574"},{"id":"T68080","span":{"begin":1729,"end":1731},"obj":"31987001"},{"id":"T22771","span":{"begin":2020,"end":2022},"obj":"32007145"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T3","span":{"begin":924,"end":946},"obj":"Phenotype"},{"id":"T4","span":{"begin":1802,"end":1811},"obj":"Phenotype"}],"attributes":[{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0011947"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"2. Classification of CoVs\nMammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae. The ICTV recommended classification is as follows: Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus. The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV. The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung. The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals. The β-CoV genus has A, B, C and D lineages. Among these, lineage B includes SARS-CoV and SARS-CoV-2. Lineage C includes MERS-CoV. The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.\nCoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13]. Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV). CoV RNA sequences mutate at a high frequency. Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA. Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV. The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14]. SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia. SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China. The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15]."}

PMC:7352545 / 8592-10616 JSONTXT

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PMC:7352545 / 8592-10616 JSON TXT