> top > docs > PMC:7352545 > spans > 8592-10616 > annotations

PMC:7352545 / 8592-10616 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T48 500-504 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T49 1256-1259 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T50 1314-1317 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 1349-1355 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T52 1384-1387 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T53 1389-1399 Body_part denotes Nucleotide http://purl.org/sig/ont/fma/fma82740
T54 1423-1430 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T55 1509-1519 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T56 1759-1777 Body_part denotes respiratory tracts http://purl.org/sig/ont/fma/fma265130
T57 1892-1898 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T58 1971-1974 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 500-504 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 1759-1777 Body_part denotes respiratory tracts http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
310 26-32 Species denotes Mammal Tax:9606
311 55-59 Species denotes CoVs Tax:11118
312 167-176 Species denotes Riboviria Tax:2559587
313 274-285 Species denotes Coronavirus Tax:11118
314 302-305 Species denotes CoV Tax:11118
315 328-331 Species denotes CoV Tax:11118
316 333-338 Species denotes β-CoV Tax:694002
317 342-345 Species denotes CoV Tax:11118
318 352-355 Species denotes CoV Tax:11118
319 361-370 Species denotes 2019-nCoV Tax:2697049
320 374-384 Species denotes SARS-CoV-2 Tax:2697049
321 399-404 Species denotes β-CoV Tax:694002
322 438-447 Species denotes mammalian Tax:9606
323 494-499 Species denotes human Tax:9606
324 512-515 Species denotes CoV Tax:11118
325 520-525 Species denotes β-CoV Tax:694002
326 539-545 Species denotes mammal Tax:9606
327 564-567 Species denotes CoV Tax:11118
328 574-577 Species denotes CoV Tax:11118
329 623-628 Species denotes β-CoV Tax:694002
330 695-703 Species denotes SARS-CoV Tax:694009
331 708-718 Species denotes SARS-CoV-2 Tax:2697049
332 739-747 Species denotes MERS-CoV Tax:1335626
333 763-771 Species denotes SARS-CoV Tax:694009
334 786-794 Species denotes MERS-CoV Tax:1335626
335 822-826 Species denotes CoVs Tax:11118
336 867-873 Species denotes humans Tax:9606
337 419-427 Disease denotes zoonotic MESH:D015047
338 448-457 Disease denotes infection MESH:D007239
339 467-486 Disease denotes respiratory disease MESH:D012140
379 1553-1556 Gene denotes bat Gene:570
380 889-893 Species denotes CoVs Tax:11118
381 897-903 Species denotes humans Tax:9606
382 1044-1049 Species denotes human Tax:9606
383 1050-1053 Species denotes CoV Tax:11118
384 1062-1071 Species denotes HCoV-HKU1 Tax:290028
385 1076-1085 Species denotes HCoV-NL63 Tax:277944
386 1095-1100 Species denotes Human Tax:9606
387 1153-1156 Species denotes CoV Tax:11118
388 1158-1167 Species denotes HCoV-NL63 Tax:277944
389 1172-1181 Species denotes HCoV-229E Tax:11137
390 1187-1192 Species denotes β-CoV Tax:694002
391 1194-1202 Species denotes SARS-CoV Tax:694009
392 1204-1214 Species denotes SARS-CoV-2 Tax:2697049
393 1216-1225 Species denotes HCoV-OC43 Tax:31631
394 1227-1236 Species denotes HCoV-HKU1 Tax:290028
395 1241-1249 Species denotes MERS-CoV Tax:1335626
396 1252-1255 Species denotes CoV Tax:11118
397 1327-1331 Species denotes CoVs Tax:11118
398 1413-1416 Species denotes CoV Tax:11118
399 1454-1462 Species denotes patients Tax:9606
400 1567-1570 Species denotes CoV Tax:11118
401 1611-1619 Species denotes SARS-CoV Tax:694009
402 1639-1642 Species denotes CoV Tax:11118
403 1666-1671 Species denotes β-CoV Tax:694002
404 1704-1714 Species denotes SARS-CoV-2 Tax:2697049
405 1718-1727 Species denotes 2019-nCoV Tax:2697049
406 1734-1744 Species denotes SARS-CoV-2 Tax:2697049
407 1753-1758 Species denotes human Tax:9606
408 1813-1823 Species denotes SARS-CoV-2 Tax:2697049
409 1829-1838 Species denotes novel CoV Tax:2697049
410 1911-1921 Species denotes SARS-CoV-2 Tax:2697049
411 1962-1970 Species denotes SARS-CoV Tax:694009
412 2001-2009 Species denotes MERS-CoV Tax:1335626
413 1101-1111 Species denotes infectious Tax:55987
414 1759-1770 Species denotes respiratory Tax:12814
415 924-946 Disease denotes respiratory infections MESH:D012141
416 1445-1453 Disease denotes COVID-19 MESH:C000657245
417 1802-1811 Disease denotes pneumonia MESH:D011014

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 374-382 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 448-457 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 467-486 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T39 695-703 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 708-716 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 763-771 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 924-946 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T43 1039-1043 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 1101-1111 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T45 1194-1202 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 1204-1212 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T47 1445-1453 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 1557-1561 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 1611-1619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 1704-1712 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T51 1734-1742 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 1802-1811 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T53 1813-1821 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 1911-1919 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 1962-1970 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T89 314-316 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T90 494-499 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T91 500-504 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T92 500-504 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T93 635-638 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T94 639-640 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T95 642-643 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T96 684-685 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T97 753-754 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T98 860-862 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T99 867-873 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T100 897-903 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T101 1044-1049 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T102 1095-1100 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T103 1280-1281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 1318-1325 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T105 1374-1376 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T106 1374-1376 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T107 1477-1478 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 1553-1556 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T109 1753-1758 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T110 1827-1828 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T257 1389-1399 Chemical denotes Nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T258 1509-1519 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T66 0-2 Sentence denotes 2.
T67 3-25 Sentence denotes Classification of CoVs
T68 26-115 Sentence denotes Mammal- and avian-infectible CoVs consist of the broad-ranged subfamily of Coronavirinae.
T69 116-166 Sentence denotes The ICTV recommended classification is as follows:
T70 167-292 Sentence denotes Riboviria (Realm)—Nidovirales (Order)— Cornidovirineae (Suborder)—coronavirida (Family)—orthocoronavirinae—Coronavirus genus.
T71 293-356 Sentence denotes The four CoV genera [11] are the α-CoV, β-CoV, γ-CoV and δ-CoV.
T72 357-505 Sentence denotes The 2019-nCoV or SARS-CoV-2 belong to the β-CoV genus and are zoonotic and cause mammalian infection, causing respiratory disease in the human lung.
T73 506-618 Sentence denotes The α-CoV and β-CoV genus target mammal hosts while the δ-CoV and γ-CoV genus target avians and certain mammals.
T74 619-662 Sentence denotes The β-CoV genus has A, B, C and D lineages.
T75 663-719 Sentence denotes Among these, lineage B includes SARS-CoV and SARS-CoV-2.
T76 720-748 Sentence denotes Lineage C includes MERS-CoV.
T77 749-888 Sentence denotes The B lineage SARS-CoV and C lineage MERS-CoV, which are classified as β-CoVs, exhibit lethal rates of 10% and 35% in humans, respectively.
T78 889-1094 Sentence denotes CoVs in humans are associated with respiratory infections such as colds with clinical importance, as experienced for the previous outbreak in 2003 of SARS-human CoV (HCoV), HCoV-HKU1 and HCoV-NL63 [12,13].
T79 1095-1251 Sentence denotes Human infectious HCoV includes seven species, including α-CoV (HCoV-NL63 and HCoV-229E) and β-CoV (SARS-CoV, SARS-CoV-2, HCoV-OC43, HCoV-HKU1 and MERS-CoV).
T80 1252-1297 Sentence denotes CoV RNA sequences mutate at a high frequency.
T81 1298-1388 Sentence denotes Among the known RNA viruses, CoVs bear the longest genome sizes of 26 to 32 kb length RNA.
T82 1389-1620 Sentence denotes Nucleotide sequences of CoV ssRNA genomes isolated from COVID-19 patients in Wuhan show a high homology of 89% with the nucleotide sequence of the previously known bat SARS-like CoV-ZXC-21 strain and 89% with the previous SARS-CoV.
T83 1621-1733 Sentence denotes The initial Wuhan CoV isolates belong to the β-CoV genus and were therefore termed SARS-CoV-2 or 2019-nCoV [14].
T84 1734-1812 Sentence denotes SARS-CoV-2 infects human respiratory tracts and causes outbreaks of pneumonia.
T85 1813-1887 Sentence denotes SARS-CoV-2 is a novel CoV and originates from the Wuhan district in China.
T86 1888-2024 Sentence denotes The genome sequence of SARS-CoV-2 exhibits 79% sequence homology with the SARS-CoV RNA sequence and 50% with the MERS-CoV sequence [15].

2_test

Id Subject Object Predicate Lexical cue
32604730-32469854-51943955 314-316 32469854 denotes 11
32604730-16575523-51943956 1087-1089 16575523 denotes 12
32604730-15034574-51943957 1090-1092 15034574 denotes 13
32604730-31987001-51943958 1729-1731 31987001 denotes 14
32604730-32007145-51943959 2020-2022 32007145 denotes 15
T71467 314-316 32469854 denotes 11
T30962 1087-1089 16575523 denotes 12
T36307 1090-1092 15034574 denotes 13
T68080 1729-1731 31987001 denotes 14
T22771 2020-2022 32007145 denotes 15

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 924-946 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 1802-1811 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090