PMC:7352545 / 7608-8590 JSONTXT

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    LitCovid_Glycan-Motif-Structure

    {"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T23","span":{"begin":190,"end":192},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T24","span":{"begin":199,"end":205},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T25","span":{"begin":267,"end":269},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T26","span":{"begin":341,"end":365},"obj":"https://glytoucan.org/Structures/Glycans/G50850NI"},{"id":"T27","span":{"begin":341,"end":365},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T28","span":{"begin":630,"end":632},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T29","span":{"begin":643,"end":645},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T30","span":{"begin":710,"end":712},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T31","span":{"begin":775,"end":777},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T32","span":{"begin":786,"end":788},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"},{"id":"T33","span":{"begin":968,"end":970},"obj":"https://glytoucan.org/Structures/Glycans/G81533KY"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T45","span":{"begin":57,"end":63},"obj":"Body_part"},{"id":"T46","span":{"begin":85,"end":91},"obj":"Body_part"},{"id":"T47","span":{"begin":341,"end":365},"obj":"Body_part"}],"attributes":[{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma82737"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma82737"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma82788"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"259","span":{"begin":684,"end":688},"obj":"Gene"},{"id":"260","span":{"begin":451,"end":457},"obj":"Species"},{"id":"261","span":{"begin":500,"end":507},"obj":"Species"},{"id":"262","span":{"begin":560,"end":567},"obj":"Species"},{"id":"263","span":{"begin":801,"end":805},"obj":"Gene"},{"id":"264","span":{"begin":813,"end":817},"obj":"Gene"},{"id":"265","span":{"begin":6,"end":12},"obj":"Chemical"},{"id":"266","span":{"begin":57,"end":63},"obj":"Chemical"},{"id":"267","span":{"begin":85,"end":91},"obj":"Chemical"},{"id":"268","span":{"begin":127,"end":132},"obj":"Chemical"},{"id":"269","span":{"begin":317,"end":332},"obj":"Chemical"},{"id":"270","span":{"begin":334,"end":338},"obj":"Chemical"},{"id":"271","span":{"begin":341,"end":365},"obj":"Chemical"},{"id":"272","span":{"begin":367,"end":372},"obj":"Chemical"},{"id":"273","span":{"begin":375,"end":401},"obj":"Chemical"},{"id":"274","span":{"begin":403,"end":408},"obj":"Chemical"},{"id":"275","span":{"begin":411,"end":439},"obj":"Chemical"},{"id":"276","span":{"begin":460,"end":488},"obj":"Chemical"},{"id":"277","span":{"begin":513,"end":548},"obj":"Chemical"},{"id":"278","span":{"begin":716,"end":719},"obj":"Chemical"},{"id":"279","span":{"begin":848,"end":863},"obj":"Chemical"}],"attributes":[{"id":"A259","pred":"tao:has_database_id","subj":"259","obj":"Gene:10312"},{"id":"A260","pred":"tao:has_database_id","subj":"260","obj":"Tax:9796"},{"id":"A261","pred":"tao:has_database_id","subj":"261","obj":"Tax:9913"},{"id":"A262","pred":"tao:has_database_id","subj":"262","obj":"Tax:9913"},{"id":"A263","pred":"tao:has_database_id","subj":"263","obj":"Gene:28923"},{"id":"A264","pred":"tao:has_database_id","subj":"264","obj":"Gene:170589"},{"id":"A265","pred":"tao:has_database_id","subj":"265","obj":"MESH:D002244"},{"id":"A266","pred":"tao:has_database_id","subj":"266","obj":"MESH:D000073893"},{"id":"A267","pred":"tao:has_database_id","subj":"267","obj":"MESH:D000073893"},{"id":"A268","pred":"tao:has_database_id","subj":"268","obj":"MESH:D009438"},{"id":"A269","pred":"tao:has_database_id","subj":"269","obj":"MESH:D009438"},{"id":"A270","pred":"tao:has_database_id","subj":"270","obj":"MESH:D009438"},{"id":"A272","pred":"tao:has_database_id","subj":"272","obj":"MESH:D009438"},{"id":"A278","pred":"tao:has_database_id","subj":"278","obj":"MESH:C101993"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T75","span":{"begin":13,"end":16},"obj":"http://purl.obolibrary.org/obo/CLO_0051568"},{"id":"T76","span":{"begin":28,"end":34},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_33208"},{"id":"T77","span":{"begin":93,"end":96},"obj":"http://purl.obolibrary.org/obo/CLO_0051568"},{"id":"T78","span":{"begin":143,"end":144},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T79","span":{"begin":207,"end":210},"obj":"http://purl.obolibrary.org/obo/CLO_0051568"},{"id":"T80","span":{"begin":451,"end":457},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9796"},{"id":"T81","span":{"begin":806,"end":808},"obj":"http://purl.obolibrary.org/obo/CLO_0009141"},{"id":"T82","span":{"begin":806,"end":808},"obj":"http://purl.obolibrary.org/obo/CLO_0050980"},{"id":"T83","span":{"begin":818,"end":820},"obj":"http://purl.obolibrary.org/obo/CLO_0009141"},{"id":"T84","span":{"begin":818,"end":820},"obj":"http://purl.obolibrary.org/obo/CLO_0050980"},{"id":"T85","span":{"begin":910,"end":913},"obj":"http://purl.obolibrary.org/obo/CLO_0051568"},{"id":"T86","span":{"begin":947,"end":949},"obj":"http://purl.obolibrary.org/obo/CLO_0037284"},{"id":"T87","span":{"begin":951,"end":953},"obj":"http://purl.obolibrary.org/obo/CLO_0002147"},{"id":"T88","span":{"begin":951,"end":953},"obj":"http://purl.obolibrary.org/obo/CLO_0051562"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-PD-CHEBI

    {"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T178","span":{"begin":6,"end":12},"obj":"Chemical"},{"id":"T180","span":{"begin":117,"end":122},"obj":"Chemical"},{"id":"T181","span":{"begin":127,"end":132},"obj":"Chemical"},{"id":"T183","span":{"begin":134,"end":139},"obj":"Chemical"},{"id":"T184","span":{"begin":190,"end":192},"obj":"Chemical"},{"id":"T189","span":{"begin":199,"end":205},"obj":"Chemical"},{"id":"T191","span":{"begin":267,"end":269},"obj":"Chemical"},{"id":"T196","span":{"begin":317,"end":332},"obj":"Chemical"},{"id":"T197","span":{"begin":328,"end":332},"obj":"Chemical"},{"id":"T198","span":{"begin":334,"end":338},"obj":"Chemical"},{"id":"T199","span":{"begin":341,"end":365},"obj":"Chemical"},{"id":"T200","span":{"begin":343,"end":349},"obj":"Chemical"},{"id":"T202","span":{"begin":350,"end":365},"obj":"Chemical"},{"id":"T203","span":{"begin":361,"end":365},"obj":"Chemical"},{"id":"T204","span":{"begin":367,"end":372},"obj":"Chemical"},{"id":"T206","span":{"begin":377,"end":385},"obj":"Chemical"},{"id":"T207","span":{"begin":386,"end":401},"obj":"Chemical"},{"id":"T208","span":{"begin":397,"end":401},"obj":"Chemical"},{"id":"T209","span":{"begin":403,"end":408},"obj":"Chemical"},{"id":"T210","span":{"begin":415,"end":423},"obj":"Chemical"},{"id":"T211","span":{"begin":424,"end":439},"obj":"Chemical"},{"id":"T212","span":{"begin":435,"end":439},"obj":"Chemical"},{"id":"T213","span":{"begin":464,"end":472},"obj":"Chemical"},{"id":"T214","span":{"begin":473,"end":488},"obj":"Chemical"},{"id":"T215","span":{"begin":484,"end":488},"obj":"Chemical"},{"id":"T216","span":{"begin":515,"end":521},"obj":"Chemical"},{"id":"T218","span":{"begin":524,"end":532},"obj":"Chemical"},{"id":"T219","span":{"begin":533,"end":548},"obj":"Chemical"},{"id":"T220","span":{"begin":544,"end":548},"obj":"Chemical"},{"id":"T221","span":{"begin":630,"end":632},"obj":"Chemical"},{"id":"T226","span":{"begin":643,"end":645},"obj":"Chemical"},{"id":"T231","span":{"begin":710,"end":712},"obj":"Chemical"},{"id":"T236","span":{"begin":716,"end":719},"obj":"Chemical"},{"id":"T237","span":{"begin":775,"end":777},"obj":"Chemical"},{"id":"T242","span":{"begin":786,"end":788},"obj":"Chemical"},{"id":"T247","span":{"begin":806,"end":808},"obj":"Chemical"},{"id":"T248","span":{"begin":818,"end":820},"obj":"Chemical"},{"id":"T249","span":{"begin":848,"end":851},"obj":"Chemical"},{"id":"T250","span":{"begin":857,"end":863},"obj":"Chemical"},{"id":"T252","span":{"begin":968,"end":970},"obj":"Chemical"}],"attributes":[{"id":"A178","pred":"chebi_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/CHEBI_27594"},{"id":"A179","pred":"chebi_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/CHEBI_33415"},{"id":"A180","pred":"chebi_id","subj":"T180","obj":"http://purl.obolibrary.org/obo/CHEBI_62084"},{"id":"A181","pred":"chebi_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/CHEBI_17012"},{"id":"A182","pred":"chebi_id","subj":"T181","obj":"http://purl.obolibrary.org/obo/CHEBI_49018"},{"id":"A183","pred":"chebi_id","subj":"T183","obj":"http://purl.obolibrary.org/obo/CHEBI_62084"},{"id":"A184","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_35962"},{"id":"A185","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_38358"},{"id":"A186","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_45373"},{"id":"A187","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_74801"},{"id":"A188","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_26667"},{"id":"A189","pred":"chebi_id","subj":"T189","obj":"http://purl.obolibrary.org/obo/CHEBI_17012"},{"id":"A190","pred":"chebi_id","subj":"T189","obj":"http://purl.obolibrary.org/obo/CHEBI_75133"},{"id":"A191","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_35962"},{"id":"A192","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_38358"},{"id":"A193","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_45373"},{"id":"A194","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_74801"},{"id":"A195","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_26667"},{"id":"A196","pred":"chebi_id","subj":"T196","obj":"http://purl.obolibrary.org/obo/CHEBI_49018"},{"id":"A197","pred":"chebi_id","subj":"T197","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A198","pred":"chebi_id","subj":"T198","obj":"http://purl.obolibrary.org/obo/CHEBI_49018"},{"id":"A199","pred":"chebi_id","subj":"T199","obj":"http://purl.obolibrary.org/obo/CHEBI_17012"},{"id":"A200","pred":"chebi_id","subj":"T200","obj":"http://purl.obolibrary.org/obo/CHEBI_40574"},{"id":"A201","pred":"chebi_id","subj":"T200","obj":"http://purl.obolibrary.org/obo/CHEBI_46887"},{"id":"A202","pred":"chebi_id","subj":"T202","obj":"http://purl.obolibrary.org/obo/CHEBI_49018"},{"id":"A203","pred":"chebi_id","subj"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I_45373"},{"id":"A255","pred":"chebi_id","subj":"T252","obj":"http://purl.obolibrary.org/obo/CHEBI_74801"},{"id":"A256","pred":"chebi_id","subj":"T252","obj":"http://purl.obolibrary.org/obo/CHEBI_26667"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-PD-GO-BP

    {"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T8","span":{"begin":757,"end":766},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T57","span":{"begin":0,"end":92},"obj":"Sentence"},{"id":"T58","span":{"begin":93,"end":133},"obj":"Sentence"},{"id":"T59","span":{"begin":134,"end":206},"obj":"Sentence"},{"id":"T60","span":{"begin":207,"end":236},"obj":"Sentence"},{"id":"T61","span":{"begin":237,"end":580},"obj":"Sentence"},{"id":"T62","span":{"begin":581,"end":642},"obj":"Sentence"},{"id":"T63","span":{"begin":643,"end":740},"obj":"Sentence"},{"id":"T64","span":{"begin":741,"end":875},"obj":"Sentence"},{"id":"T65","span":{"begin":876,"end":982},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The 9-carbon SAs are mainly animal-specific with anionic sugars attached to terminal sugars. SAs exist in two forms, NeuGc and NeuAc. NeuGc is a differentially modified form of the parental SA form, Neu5Ac. SAs are structurally diverse. For example, several modified SA forms are known for their structures including neuraminic acid (NeuC), N-acetyl neuraminic acid (NeuAc), N-glycolyl neuraminic acid (NeuGc), N,O-diacetyl neuraminic acid (occurs in horses), N,O-diacetyl neuraminic acid (occurs in bovines) and N-acetyl O-diacetyl neuraminic acid (occurs in bovines) (Figure 2). Sialyltransferases (STs) biosynthesize different SA linkages. SA linkage diversity occurs at the α2-3, α2-6, α2-8 or α2-9 to the SA or Gal residues (Figure 3). For example, in formation of α2,3 SA or α2,6 SA structures, α2,3-ST and α2,6-ST utilize substrates such as Galβ-1,4-GlcNAc (Figure 4). The most frequent modification of SAs is O-acetylation at positions of C4, C7, C8 and C9 of SA (Figure 5)."}