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PMC:7352545 / 70655-71520 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T210 636-638 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T684 89-93 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T685 106-118 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T686 144-150 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T687 267-271 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T688 272-288 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T689 283-288 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T690 307-319 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T691 342-352 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T692 442-454 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T693 504-516 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T38 267-271 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T271 3-11 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T272 61-70 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T273 161-169 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T274 172-181 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T275 211-219 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1017 89-93 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1018 133-134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1019 267-288 http://purl.obolibrary.org/obo/CL_0000082 denotes lung epithelial cells
T1020 342-361 http://purl.obolibrary.org/obo/CHEBI_33708 denotes Amino acid residues
T1021 342-361 http://purl.obolibrary.org/obo/PR_000036907 denotes Amino acid residues
T1022 469-474 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1023 548-549 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1024 586-588 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T1025 593-595 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T1026 593-595 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T1027 605-607 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T1028 683-688 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T1029 714-716 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T1030 714-716 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T1031 740-745 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T1032 821-822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1033 840-845 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T402 106-118 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T403 144-150 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T404 307-319 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T405 342-352 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T91097 348-352 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T4967 442-454 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T84937 504-516 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T409 593-595 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T50913 636-638 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T415 714-716 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T20073 827-835 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T129 759-768 http://purl.obolibrary.org/obo/GO_0009058 denotes formation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T684 0-160 Sentence denotes In SARS-CoV-2, the ACE2 receptor is an attachment, entry and infection receptor into the cell, when the S glycoprotein is cleaved by a specific serine protease.
T685 161-289 Sentence denotes SARS-CoV-2 infection is regulated by glycosylated SARS-CoV-2 viral particles and glycosylated ACE2 in the lung epithelial cells.
T686 290-341 Sentence denotes RBD of the CoV S glycoprotein recognizes ACE2 [82].
T687 342-486 Sentence denotes Amino acid residues 442, 472, 479, 480 and 487 located on the receptor-binding motif (RBM) of the S glycoprotein RBD recognize human ACE2 [138].
T688 487-596 Sentence denotes Trimeric viral S glycoprotein is glycosylated and cleaved by a protease, furin, into two subunits, S1 and S2.
T689 597-694 Sentence denotes Subunit S1 is further cleaved into the SA and SB domains and the SB domain recognizes human ACE2.
T690 695-775 Sentence denotes The N-glycosylated S2 subunit is involved in virus-ACE2 complex formation [139].
T691 776-865 Sentence denotes Therefore, the glycosylated ACE2 receptor is a key molecule for virus binding and fusion.

2_test

Id Subject Object Predicate Lexical cue
32604730-32264791-51944104 337-339 32264791 denotes 82
32604730-25428871-51944105 481-484 25428871 denotes 138
32604730-32155444-51944106 770-773 32155444 denotes 139
T42969 337-339 32264791 denotes 82
T98999 481-484 25428871 denotes 138
T43884 770-773 32155444 denotes 139