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PMC:7352545 / 53920-55058 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T190 518-520 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T191 1088-1090 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T192 1111-1113 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T463 157-161 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T464 269-281 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T465 324-336 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T466 350-361 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835
T467 445-452 Body_part denotes proline http://purl.org/sig/ont/fma/fma82761
T468 494-506 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T469 751-763 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T470 891-903 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T471 966-982 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T472 977-982 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T473 997-1001 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T474 1002-1027 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T475 1022-1027 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T26 362-366 Body_part denotes tail http://purl.obolibrary.org/obo/UBERON_0002415
T27 997-1001 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T749 85-90 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T750 109-110 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T751 150-151 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T752 157-161 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T753 304-305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T754 342-343 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T755 362-366 http://purl.obolibrary.org/obo/UBERON_0002415 denotes tail
T756 410-411 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T757 605-607 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T758 674-676 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T759 674-676 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T760 778-779 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T761 801-803 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T762 808-810 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T763 808-810 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T764 847-849 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T765 847-849 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T766 869-871 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T767 869-871 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T768 942-947 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camel
T769 966-976 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T770 977-982 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T771 991-996 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T772 997-1001 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T773 997-1001 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T774 1011-1021 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T775 1022-1027 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T90351 62-65 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T82 79-82 Chemical denotes DPP http://purl.obolibrary.org/obo/CHEBI_34680|http://purl.obolibrary.org/obo/CHEBI_60069
T84 116-118 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T22427 119-121 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T57434 269-281 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T89040 318-320 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T89 321-323 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T91 324-336 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T92 445-452 Chemical denotes proline http://purl.obolibrary.org/obo/CHEBI_17203|http://purl.obolibrary.org/obo/CHEBI_26271
T94 453-463 Chemical denotes dipeptides http://purl.obolibrary.org/obo/CHEBI_46761
T24076 494-506 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T96 518-520 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T101 674-676 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T20492 727-729 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T105 751-763 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T106 808-810 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T107 847-849 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T69256 869-871 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T51531 891-903 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T14157 1088-1090 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T8117 1095-1107 Chemical denotes acetyl group http://purl.obolibrary.org/obo/CHEBI_40574
T86701 1095-1101 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_46887
T82881 1102-1107 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T24700 1111-1113 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T123 1118-1126 Chemical denotes glycolyl http://purl.obolibrary.org/obo/CHEBI_30884
T124 1127-1132 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T518 0-6 Sentence denotes 6.3.2.
T519 7-57 Sentence denotes Dipeptidyl peptidase-4 (DPP4) as MERS-CoV Receptor
T520 58-101 Sentence denotes The Ser exopeptidase DPP-4/human CD26 (PDB:
T521 102-184 Sentence denotes 4L72), a type II TM ectopeptidase, functions as a host cell receptor for MERS-CoV.
T522 185-295 Sentence denotes The RBD structure was characterized by crystallography approaches of the MERS-CoV S glycoprotein–DPP4 complex.
T523 296-429 Sentence denotes DPP4 is a single type II TM glycoprotein with a small cytoplasmic tail in the N-terminal region and is present as a homodimeric form.
T524 430-491 Sentence denotes DPP4 cleaves X-proline dipeptides from the N-terminal region.
T525 492-591 Sentence denotes S glycoprotein recognizes SA species and DPP44 as the attachment and entry receptors, respectively.
T526 592-669 Sentence denotes The MERS-CoV S1 N-terminal domain attaches to DPP4 as the host receptor [81].
T527 670-739 Sentence denotes The S2 C-terminal domain of MERS-CoV anchors to cellular PM to enter.
T528 740-824 Sentence denotes MERS-CoV S glycoprotein is cleaved at a sequence between the S1 and S2 domains [96].
T529 825-879 Sentence denotes Another cleavage site S2′ is present in the S2 domain.
T530 880-1048 Sentence denotes MERS CoV S glycoprotein sialyl receptors are expressed in the camel nasal respiratory epithelial cells and the human lung alveolar epithelial cells, which express DPP4.
T531 1049-1138 Sentence denotes Binding capacities are hindered by the SA 9-O-acetyl group or SA 5-N-glycolyl group [75].

2_test

Id Subject Object Predicate Lexical cue
32604730-23486063-51944059 665-667 23486063 denotes 81
32604730-27791014-51944060 820-822 27791014 denotes 96
32604730-28923942-51944061 1134-1136 28923942 denotes 75
T57405 665-667 23486063 denotes 81
T40903 820-822 27791014 denotes 96
T18110 1134-1136 28923942 denotes 75