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PMC:7352545 / 20518-21274 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T55 81-83 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T56 234-236 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T57 301-303 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T58 430-432 https://glytoucan.org/Structures/Glycans/G81533KY denotes SA
T59 686-692 https://glytoucan.org/Structures/Glycans/G81533KY denotes Neu5Ac

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T209 449-464 Body_part denotes Golgi apparatus http://purl.org/sig/ont/fma/fma63843
T210 465-476 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T240 56-59 http://purl.obolibrary.org/obo/CLO_0037284 denotes C-4
T241 61-64 http://purl.obolibrary.org/obo/CLO_0002147 denotes C-7
T242 61-64 http://purl.obolibrary.org/obo/CLO_0051562 denotes C-7
T243 165-168 http://purl.obolibrary.org/obo/CLO_0051568 denotes SAs
T244 184-185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T245 250-253 http://purl.obolibrary.org/obo/CLO_0002147 denotes C-7
T246 250-253 http://purl.obolibrary.org/obo/CLO_0051562 denotes C-7
T247 332-336 http://purl.obolibrary.org/obo/CLO_0002200 denotes Cas1
T248 430-434 http://purl.obolibrary.org/obo/UBERON_0009856 denotes SA C
T249 565-568 http://purl.obolibrary.org/obo/CLO_0002147 denotes C-7
T250 565-568 http://purl.obolibrary.org/obo/CLO_0051562 denotes C-7
T251 598-601 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T252 655-661 http://purl.obolibrary.org/obo/CLO_0001627 denotes A as a
T253 733-741 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T461 6-12 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T463 81-83 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T468 234-236 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T473 237-244 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T474 301-303 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T479 409-415 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T481 430-432 Chemical denotes SA http://purl.obolibrary.org/obo/CHEBI_35962|http://purl.obolibrary.org/obo/CHEBI_38358|http://purl.obolibrary.org/obo/CHEBI_45373|http://purl.obolibrary.org/obo/CHEBI_74801|http://purl.obolibrary.org/obo/CHEBI_26667
T486 547-553 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T488 554-559 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T489 639-645 Chemical denotes acetyl http://purl.obolibrary.org/obo/CHEBI_40574|http://purl.obolibrary.org/obo/CHEBI_46887
T491 646-656 Chemical denotes coenzyme A http://purl.obolibrary.org/obo/CHEBI_15346
T492 646-654 Chemical denotes coenzyme http://purl.obolibrary.org/obo/CHEBI_23354
T493 662-667 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T494 682-692 Chemical denotes CMP-Neu5Ac http://purl.obolibrary.org/obo/CHEBI_16556
T495 682-685 Chemical denotes CMP http://purl.obolibrary.org/obo/CHEBI_17361|http://purl.obolibrary.org/obo/CHEBI_60377
T497 686-692 Chemical denotes Neu5Ac http://purl.obolibrary.org/obo/CHEBI_17012|http://purl.obolibrary.org/obo/CHEBI_75133
T499 699-707 Chemical denotes acceptor http://purl.obolibrary.org/obo/CHEBI_15339
T500 745-755 Chemical denotes CMP-Neu5Gc http://purl.obolibrary.org/obo/CHEBI_18098
T501 745-748 Chemical denotes CMP http://purl.obolibrary.org/obo/CHEBI_17361|http://purl.obolibrary.org/obo/CHEBI_60377
T503 749-755 Chemical denotes Neu5Gc http://purl.obolibrary.org/obo/CHEBI_62084

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T197 0-169 Sentence denotes The O-acetyl modification occurs in single positions of C-4, C-7, C-8 and C-9 of SA as well as in combined C-positions to yield Neu4,5Ac2, Neu5,9Ac2 and Neu5,7,9Ac3 SAs.
T198 170-245 Sentence denotes Neu5Ac9NAc is a chemical and biologic mimic of Neu5,9Ac2 in the SA-glycans.
T199 246-376 Sentence denotes The C-7 and/or C-9 O-acetylations are catalyzed by the SA O-acetyltransferase enzyme, Cas1 domain containing 1 (CasD1) (Figure 6).
T200 377-482 Sentence denotes CasD1 catalyzes the addition of acetyl groups to the SA C-7 at the late Golgi apparatus compartment [31].
T201 483-627 Sentence denotes Thereafter, an enzyme termed “migrase” transfers the additional acetyl-group from C-7 to C-9, although this enzyme has not been identified [29].
T202 628-756 Sentence denotes CasD1 uses acetyl-coenzyme A as a donor substrate and CMP-Neu5Ac as an acceptor substrate, but with weak activity on CMP-Neu5Gc.

2_test

Id Subject Object Predicate Lexical cue
32604730-26169044-51943971 478-480 26169044 denotes 31
T96738 478-480 26169044 denotes 31