PMC:7352545 / 15731-16749 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T141","span":{"begin":22,"end":29},"obj":"Body_part"},{"id":"T142","span":{"begin":33,"end":36},"obj":"Body_part"},{"id":"T143","span":{"begin":52,"end":59},"obj":"Body_part"},{"id":"T144","span":{"begin":81,"end":84},"obj":"Body_part"},{"id":"T145","span":{"begin":85,"end":91},"obj":"Body_part"},{"id":"T146","span":{"begin":99,"end":106},"obj":"Body_part"},{"id":"T147","span":{"begin":132,"end":135},"obj":"Body_part"},{"id":"T148","span":{"begin":136,"end":142},"obj":"Body_part"},{"id":"T149","span":{"begin":170,"end":177},"obj":"Body_part"},{"id":"T150","span":{"begin":199,"end":202},"obj":"Body_part"},{"id":"T151","span":{"begin":344,"end":349},"obj":"Body_part"},{"id":"T152","span":{"begin":395,"end":398},"obj":"Body_part"},{"id":"T153","span":{"begin":451,"end":459},"obj":"Body_part"},{"id":"T154","span":{"begin":522,"end":529},"obj":"Body_part"},{"id":"T155","span":{"begin":546,"end":549},"obj":"Body_part"},{"id":"T156","span":{"begin":560,"end":567},"obj":"Body_part"},{"id":"T157","span":{"begin":582,"end":590},"obj":"Body_part"},{"id":"T158","span":{"begin":646,"end":653},"obj":"Body_part"},{"id":"T159","span":{"begin":795,"end":797},"obj":"Body_part"},{"id":"T160","span":{"begin":805,"end":807},"obj":"Body_part"},{"id":"T161","span":{"begin":833,"end":837},"obj":"Body_part"},{"id":"T162","span":{"begin":924,"end":931},"obj":"Body_part"},{"id":"T163","span":{"begin":993,"end":999},"obj":"Body_part"}],"attributes":[{"id":"A141","pred":"fma_id","subj":"T141","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A142","pred":"fma_id","subj":"T142","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A143","pred":"fma_id","subj":"T143","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A144","pred":"fma_id","subj":"T144","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A145","pred":"fma_id","subj":"T145","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A146","pred":"fma_id","subj":"T146","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A147","pred":"fma_id","subj":"T147","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A148","pred":"fma_id","subj":"T148","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A149","pred":"fma_id","subj":"T149","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A150","pred":"fma_id","subj":"T150","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A151","pred":"fma_id","subj":"T151","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A152","pred":"fma_id","subj":"T152","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A153","pred":"fma_id","subj":"T153","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A154","pred":"fma_id","subj":"T154","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A155","pred":"fma_id","subj":"T155","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A156","pred":"fma_id","subj":"T156","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A157","pred":"fma_id","subj":"T157","obj":"http://purl.org/sig/ont/fma/fma82747"},{"id":"A158","pred":"fma_id","subj":"T158","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A159","pred":"fma_id","subj":"T159","obj":"http://purl.org/sig/ont/fma/fma66592"},{"id":"A160","pred":"fma_id","subj":"T160","obj":"http://purl.org/sig/ont/fma/fma66592"},{"id":"A161","pred":"fma_id","subj":"T161","obj":"http://purl.org/sig/ont/fma/fma67122"},{"id":"A162","pred":"fma_id","subj":"T162","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A163","pred":"fma_id","subj":"T163","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-PubTator","denotations":[{"id":"510","span":{"begin":159,"end":162},"obj":"Gene"},{"id":"511","span":{"begin":755,"end":797},"obj":"Gene"},{"id":"512","span":{"begin":799,"end":807},"obj":"Gene"},{"id":"513","span":{"begin":890,"end":897},"obj":"Gene"},{"id":"514","span":{"begin":252,"end":255},"obj":"Gene"},{"id":"515","span":{"begin":266,"end":269},"obj":"Species"},{"id":"516","span":{"begin":355,"end":358},"obj":"Species"},{"id":"517","span":{"begin":635,"end":643},"obj":"Species"},{"id":"518","span":{"begin":727,"end":735},"obj":"Species"},{"id":"519","span":{"begin":913,"end":921},"obj":"Species"}],"attributes":[{"id":"A510","pred":"tao:has_database_id","subj":"510","obj":"Gene:1283"},{"id":"A511","pred":"tao:has_database_id","subj":"511","obj":"Gene:3178"},{"id":"A512","pred":"tao:has_database_id","subj":"512","obj":"Gene:3178"},{"id":"A513","pred":"tao:has_database_id","subj":"513","obj":"Gene:3178"},{"id":"A514","pred":"tao:has_database_id","subj":"514","obj":"Gene:5131"},{"id":"A515","pred":"tao:has_database_id","subj":"515","obj":"Tax:11118"},{"id":"A516","pred":"tao:has_database_id","subj":"516","obj":"Tax:11118"},{"id":"A517","pred":"tao:has_database_id","subj":"517","obj":"Tax:694009"},{"id":"A518","pred":"tao:has_database_id","subj":"518","obj":"Tax:694009"},{"id":"A519","pred":"tao:has_database_id","subj":"519","obj":"Tax:694009"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T67","span":{"begin":151,"end":154},"obj":"Disease"},{"id":"T69","span":{"begin":635,"end":643},"obj":"Disease"},{"id":"T70","span":{"begin":727,"end":735},"obj":"Disease"},{"id":"T71","span":{"begin":913,"end":921},"obj":"Disease"}],"attributes":[{"id":"A67","pred":"mondo_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/MONDO_0008449"},{"id":"A68","pred":"mondo_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/MONDO_0018075"},{"id":"A69","pred":"mondo_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A70","pred":"mondo_id","subj":"T70","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T186","span":{"begin":37,"end":44},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T187","span":{"begin":344,"end":349},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T188","span":{"begin":715,"end":723},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T189","span":{"begin":940,"end":941},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T316","span":{"begin":22,"end":29},"obj":"Chemical"},{"id":"T317","span":{"begin":52,"end":59},"obj":"Chemical"},{"id":"T318","span":{"begin":99,"end":106},"obj":"Chemical"},{"id":"T319","span":{"begin":170,"end":177},"obj":"Chemical"},{"id":"T320","span":{"begin":430,"end":442},"obj":"Chemical"},{"id":"T321","span":{"begin":438,"end":442},"obj":"Chemical"},{"id":"T322","span":{"begin":451,"end":459},"obj":"Chemical"},{"id":"T323","span":{"begin":522,"end":529},"obj":"Chemical"},{"id":"T324","span":{"begin":560,"end":567},"obj":"Chemical"},{"id":"T325","span":{"begin":582,"end":590},"obj":"Chemical"},{"id":"T326","span":{"begin":646,"end":653},"obj":"Chemical"},{"id":"T327","span":{"begin":854,"end":861},"obj":"Chemical"},{"id":"T328","span":{"begin":924,"end":931},"obj":"Chemical"}],"attributes":[{"id":"A316","pred":"chebi_id","subj":"T316","obj":"http://purl.obolibrary.org/obo/CHEBI_16541"},{"id":"A317","pred":"chebi_id","subj":"T317","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A318","pred":"chebi_id","subj":"T318","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A319","pred":"chebi_id","subj":"T319","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A320","pred":"chebi_id","subj":"T320","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"},{"id":"A321","pred":"chebi_id","subj":"T321","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A322","pred":"chebi_id","subj":"T322","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A323","pred":"chebi_id","subj":"T323","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A324","pred":"chebi_id","subj":"T324","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A325","pred":"chebi_id","subj":"T325","obj":"http://purl.obolibrary.org/obo/CHEBI_28087"},{"id":"A326","pred":"chebi_id","subj":"T326","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A327","pred":"chebi_id","subj":"T327","obj":"http://purl.obolibrary.org/obo/CHEBI_33252"},{"id":"A328","pred":"chebi_id","subj":"T328","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T20","span":{"begin":217,"end":230},"obj":"http://purl.obolibrary.org/obo/GO_0003968"},{"id":"T21","span":{"begin":217,"end":230},"obj":"http://purl.obolibrary.org/obo/GO_0003899"},{"id":"T22","span":{"begin":281,"end":304},"obj":"http://purl.obolibrary.org/obo/GO_0045087"},{"id":"T23","span":{"begin":359,"end":372},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T24","span":{"begin":395,"end":409},"obj":"http://purl.obolibrary.org/obo/GO_0034337"},{"id":"T25","span":{"begin":546,"end":559},"obj":"http://purl.obolibrary.org/obo/GO_0034337"},{"id":"T26","span":{"begin":616,"end":630},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T27","span":{"begin":833,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0000398"},{"id":"T28","span":{"begin":833,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0000394"},{"id":"T29","span":{"begin":833,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0000374"},{"id":"T30","span":{"begin":833,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0000373"},{"id":"T31","span":{"begin":833,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0000372"},{"id":"T32","span":{"begin":838,"end":846},"obj":"http://purl.obolibrary.org/obo/GO_0045292"},{"id":"T33","span":{"begin":877,"end":888},"obj":"http://purl.obolibrary.org/obo/GO_0006412"},{"id":"T34","span":{"begin":958,"end":971},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T35","span":{"begin":1000,"end":1012},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"LitCovid-sentences","denotations":[{"id":"T140","span":{"begin":0,"end":4},"obj":"Sentence"},{"id":"T141","span":{"begin":5,"end":29},"obj":"Sentence"},{"id":"T142","span":{"begin":30,"end":92},"obj":"Sentence"},{"id":"T143","span":{"begin":93,"end":112},"obj":"Sentence"},{"id":"T144","span":{"begin":113,"end":163},"obj":"Sentence"},{"id":"T145","span":{"begin":164,"end":245},"obj":"Sentence"},{"id":"T146","span":{"begin":246,"end":256},"obj":"Sentence"},{"id":"T147","span":{"begin":257,"end":314},"obj":"Sentence"},{"id":"T148","span":{"begin":315,"end":497},"obj":"Sentence"},{"id":"T149","span":{"begin":498,"end":568},"obj":"Sentence"},{"id":"T150","span":{"begin":569,"end":741},"obj":"Sentence"},{"id":"T151","span":{"begin":742,"end":1018},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}

{"project":"2_test","denotations":[{"id":"32604730-15862300-51943963","span":{"begin":1014,"end":1016},"obj":"15862300"},{"id":"T39967","span":{"begin":1014,"end":1016},"obj":"15862300"}],"text":"3.2. Nucleocapsid (N) Protein\nIn RNA viruses, the N protein recognizes the viral RNA genome. The N protein (PDB: 6M3M) binds to the RNA genome via the NTD and CTD. The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC). NSP3 (PDB: 6VXS) of CoV blocks the innate immune responses of hosts. After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts. Representatively, the N protein is known as the RNA chaperone protein. For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19]. In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20]."}