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PMC:7352545 / 15731-16749 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T141 22-29 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T142 33-36 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T143 52-59 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T144 81-84 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T145 85-91 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T146 99-106 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T147 132-135 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T148 136-142 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T149 170-177 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T150 199-202 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T151 344-349 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T152 395-398 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T153 451-459 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T154 522-529 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T155 546-549 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T156 560-567 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T157 582-590 Body_part denotes glycogen http://purl.org/sig/ont/fma/fma82747
T158 646-653 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T159 795-797 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T160 805-807 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T161 833-837 Body_part denotes mRNA http://purl.org/sig/ont/fma/fma67122
T162 924-931 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T163 993-999 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
510 159-162 Gene denotes CTD Gene:1283
511 755-797 Gene denotes heterogeneous nuclear ribonucleoprotein A1 Gene:3178
512 799-807 Gene denotes hnRNP A1 Gene:3178
513 890-897 Gene denotes hnRNPA1 Gene:3178
514 252-255 Gene denotes PDB Gene:5131
515 266-269 Species denotes CoV Tax:11118
516 355-358 Species denotes CoV Tax:11118
517 635-643 Species denotes SARS-CoV Tax:694009
518 727-735 Species denotes SARS-CoV Tax:694009
519 913-921 Species denotes SARS-CoV Tax:694009

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 151-154 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T69 635-643 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 727-735 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 913-921 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T186 37-44 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T187 344-349 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T188 715-723 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T189 940-941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T316 22-29 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T317 52-59 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T318 99-106 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T319 170-177 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T320 430-442 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T321 438-442 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T322 451-459 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T323 522-529 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T324 560-567 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T325 582-590 Chemical denotes glycogen http://purl.obolibrary.org/obo/CHEBI_28087
T326 646-653 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T327 854-861 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T328 924-931 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T20 217-230 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T21 217-230 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T22 281-304 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune responses
T23 359-372 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T24 395-409 http://purl.obolibrary.org/obo/GO_0034337 denotes RNA chaperones
T25 546-559 http://purl.obolibrary.org/obo/GO_0034337 denotes RNA chaperone
T26 616-630 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylates
T27 833-846 http://purl.obolibrary.org/obo/GO_0000398 denotes mRNA splicing
T28 833-846 http://purl.obolibrary.org/obo/GO_0000394 denotes mRNA splicing
T29 833-846 http://purl.obolibrary.org/obo/GO_0000374 denotes mRNA splicing
T30 833-846 http://purl.obolibrary.org/obo/GO_0000373 denotes mRNA splicing
T31 833-846 http://purl.obolibrary.org/obo/GO_0000372 denotes mRNA splicing
T32 838-846 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T33 877-888 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T34 958-971 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T35 1000-1012 http://purl.obolibrary.org/obo/GO_0009058 denotes biosynthesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T140 0-4 Sentence denotes 3.2.
T141 5-29 Sentence denotes Nucleocapsid (N) Protein
T142 30-92 Sentence denotes In RNA viruses, the N protein recognizes the viral RNA genome.
T143 93-112 Sentence denotes The N protein (PDB:
T144 113-163 Sentence denotes 6M3M) binds to the RNA genome via the NTD and CTD.
T145 164-245 Sentence denotes The N protein tethers to the viral RNA and replicase–transcriptase complex (RTC).
T146 246-256 Sentence denotes NSP3 (PDB:
T147 257-314 Sentence denotes 6VXS) of CoV blocks the innate immune responses of hosts.
T148 315-497 Sentence denotes After entrance into the host cells, for CoV transcription and particle release, RNA chaperones such as nonspecific nucleic acid binding proteins potentiate ssRNA conformation shifts.
T149 498-568 Sentence denotes Representatively, the N protein is known as the RNA chaperone protein.
T150 569-741 Sentence denotes For example, glycogen synthase kinase 3 (GSK3) phosphorylates the SARS-CoV N-protein and thus, GSK3 inhibition contributes to reduced replication activity of SARS-CoV [19].
T151 742-1018 Sentence denotes In addition, heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1) regulates the preformed mRNA splicing in the nucleus and continuous translation. hnRNPA1 interacts with SARS-CoV N protein to form a replication and transcription complex during ssRNA genome biosynthesis [20].

2_test

Id Subject Object Predicate Lexical cue
32604730-15862300-51943963 1014-1016 15862300 denotes 20
T39967 1014-1016 15862300 denotes 20