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PMC:7352545 / 14511-15729 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T122 3-6 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T123 22-34 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T124 62-69 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T125 173-175 Body_part denotes ER http://purl.org/sig/ont/fma/fma63842
T126 184-189 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T127 204-216 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T128 287-299 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T129 344-356 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T130 417-422 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T131 476-488 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T132 543-555 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T133 595-607 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T134 677-689 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T135 776-780 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T136 913-926 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T137 913-917 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T138 949-958 Body_part denotes cytosolic http://purl.org/sig/ont/fma/fma66836
T139 1104-1116 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T140 1191-1198 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
486 711-716 Gene denotes spike Gene:43740568
487 327-328 Gene denotes N Gene:43740575
488 226-227 Gene denotes N Gene:43740575
489 342-343 Gene denotes S Gene:43740568
490 285-286 Gene denotes S Gene:43740568
491 202-203 Gene denotes S Gene:43740568
492 1170-1173 Gene denotes CTD Gene:1283
493 571-576 Gene denotes spike Gene:43740568
494 191-201 Species denotes SARS-CoV-2 Tax:2697049
495 451-455 Species denotes CoVs Tax:11118
496 969-977 Species denotes SARS-CoV Tax:694009
497 982-990 Species denotes MERS-CoV Tax:1335626
498 1104-1116 Chemical denotes carbohydrate MESH:D002241
499 430-439 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T60 119-122 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T62 191-199 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 430-439 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 969-977 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 1091-1094 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T154 7-14 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T155 184-189 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T156 223-225 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T157 401-406 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T158 417-422 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T159 464-465 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T160 556-559 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T161 560-561 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 636-637 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 724-732 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T164 756-761 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T165 776-780 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T166 782-784 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T167 821-823 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T168 828-830 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T169 828-830 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T170 840-841 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 842-844 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T172 845-847 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T173 845-847 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T174 863-865 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T175 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 913-917 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T177 918-926 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T178 931-933 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T179 931-933 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T180 996-998 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T181 1030-1031 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 1045-1050 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T183 1088-1090 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T184 1139-1141 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T185 1177-1179 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T298 22-34 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T299 62-69 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T300 204-216 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T301 226-234 Chemical denotes N-glycan http://purl.obolibrary.org/obo/CHEBI_59520
T302 287-299 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T303 327-336 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T304 329-336 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T305 344-356 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T306 476-488 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T307 543-555 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T308 595-607 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T309 677-689 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T310 724-732 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T311 828-830 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T312 845-847 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T313 931-933 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T314 1104-1116 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T315 1191-1198 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T128 0-40 Sentence denotes In RNA viruses, the S glycoprotein (PDB:
T129 41-190 Sentence denotes 6VSB) is the biggest protein, heavily glycosylated and its N-terminal domain (NTD) sequence binds to the host receptor to enter the ER of host cells.
T130 191-260 Sentence denotes SARS-CoV-2 S-glycoprotein bears 22 N-glycan sequons in each protomer.
T131 261-337 Sentence denotes Therefore, the trimeric S glycoprotein surface is dominated by 66 N-glycans.
T132 338-446 Sentence denotes The S glycoprotein mediates direct and indirect interaction of virus with host cells in the infection cycle.
T133 447-536 Sentence denotes All CoVs exhibit a surface S glycoprotein, which bears the receptor-binding domain (RBD).
T134 537-587 Sentence denotes The S glycoprotein has a distinct spike structure.
T135 588-786 Sentence denotes When S glycoprotein binds to its host receptor, a host furin-like protease cleaves the S glycoprotein, which liberates the spike fusion peptides, allowing entry of the virus into the host cell [18].
T136 787-964 Sentence denotes The furin-like protease-generated S1 and S2 exist as a S1/S2 complex, where S1 in a homotrimeric form interacts with the host cell membrane and S2 penetrates the cytosolic area.
T137 965-1083 Sentence denotes For SARS-CoV and MERS-CoV, the S1 C-terminal domains (CTDs) have a dual role in virus entry via attachment and fusion.
T138 1084-1165 Sentence denotes The S1 NTD binds to carbohydrate receptors because the S1 domains act as the RBD.
T139 1166-1218 Sentence denotes The CTD of S1 recognizes protein receptors via RBDs.

2_test

Id Subject Object Predicate Lexical cue
32604730-24121034-51943962 782-784 24121034 denotes 18
T51478 782-784 24121034 denotes 18