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PMC:7352545 / 14469-15729 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T121 29-41 Body_part denotes Glycoprotein http://purl.org/sig/ont/fma/fma62925
T122 45-48 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T123 64-76 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T124 104-111 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T125 215-217 Body_part denotes ER http://purl.org/sig/ont/fma/fma63842
T126 226-231 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T127 246-258 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T128 329-341 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T129 386-398 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T130 459-464 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T131 518-530 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T132 585-597 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T133 637-649 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T134 719-731 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T135 818-822 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T136 955-968 Body_part denotes cell membrane http://purl.org/sig/ont/fma/fma63841
T137 955-959 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T138 991-1000 Body_part denotes cytosolic http://purl.org/sig/ont/fma/fma66836
T139 1146-1158 Body_part denotes carbohydrate http://purl.org/sig/ont/fma/fma82737
T140 1233-1240 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
471 5-10 Gene denotes Spike Gene:43740568
486 753-758 Gene denotes spike Gene:43740568
487 369-370 Gene denotes N Gene:43740575
488 268-269 Gene denotes N Gene:43740575
489 384-385 Gene denotes S Gene:43740568
490 327-328 Gene denotes S Gene:43740568
491 244-245 Gene denotes S Gene:43740568
492 1212-1215 Gene denotes CTD Gene:1283
493 613-618 Gene denotes spike Gene:43740568
494 233-243 Species denotes SARS-CoV-2 Tax:2697049
495 493-497 Species denotes CoVs Tax:11118
496 1011-1019 Species denotes SARS-CoV Tax:694009
497 1024-1032 Species denotes MERS-CoV Tax:1335626
498 1146-1158 Chemical denotes carbohydrate MESH:D002241
499 472-481 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T60 161-164 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T62 233-241 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 472-481 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 1011-1019 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 1133-1136 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T154 49-56 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T155 226-231 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T156 265-267 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T157 443-448 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T158 459-464 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T159 506-507 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T160 598-601 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T161 602-603 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 678-679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T163 766-774 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T164 798-803 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T165 818-822 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T166 824-826 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T167 863-865 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T168 870-872 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T169 870-872 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T170 882-883 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 884-886 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T172 887-889 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T173 887-889 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T174 905-907 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T175 911-912 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 955-959 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T177 960-968 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T178 973-975 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T179 973-975 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T180 1038-1040 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T181 1072-1073 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 1087-1092 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T183 1130-1132 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T184 1181-1183 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T185 1219-1221 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T297 29-41 Chemical denotes Glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T298 64-76 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T299 104-111 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T300 246-258 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T301 268-276 Chemical denotes N-glycan http://purl.obolibrary.org/obo/CHEBI_59520
T302 329-341 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T303 369-378 Chemical denotes N-glycans http://purl.obolibrary.org/obo/CHEBI_59520
T304 371-378 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T305 386-398 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T306 518-530 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T307 585-597 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T308 637-649 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T309 719-731 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T310 766-774 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T311 870-872 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T312 887-889 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T313 973-975 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T314 1146-1158 Chemical denotes carbohydrate http://purl.obolibrary.org/obo/CHEBI_16646
T315 1233-1240 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T126 0-4 Sentence denotes 3.1.
T127 5-41 Sentence denotes Spike (S) Transmembrane Glycoprotein
T128 42-82 Sentence denotes In RNA viruses, the S glycoprotein (PDB:
T129 83-232 Sentence denotes 6VSB) is the biggest protein, heavily glycosylated and its N-terminal domain (NTD) sequence binds to the host receptor to enter the ER of host cells.
T130 233-302 Sentence denotes SARS-CoV-2 S-glycoprotein bears 22 N-glycan sequons in each protomer.
T131 303-379 Sentence denotes Therefore, the trimeric S glycoprotein surface is dominated by 66 N-glycans.
T132 380-488 Sentence denotes The S glycoprotein mediates direct and indirect interaction of virus with host cells in the infection cycle.
T133 489-578 Sentence denotes All CoVs exhibit a surface S glycoprotein, which bears the receptor-binding domain (RBD).
T134 579-629 Sentence denotes The S glycoprotein has a distinct spike structure.
T135 630-828 Sentence denotes When S glycoprotein binds to its host receptor, a host furin-like protease cleaves the S glycoprotein, which liberates the spike fusion peptides, allowing entry of the virus into the host cell [18].
T136 829-1006 Sentence denotes The furin-like protease-generated S1 and S2 exist as a S1/S2 complex, where S1 in a homotrimeric form interacts with the host cell membrane and S2 penetrates the cytosolic area.
T137 1007-1125 Sentence denotes For SARS-CoV and MERS-CoV, the S1 C-terminal domains (CTDs) have a dual role in virus entry via attachment and fusion.
T138 1126-1207 Sentence denotes The S1 NTD binds to carbohydrate receptors because the S1 domains act as the RBD.
T139 1208-1260 Sentence denotes The CTD of S1 recognizes protein receptors via RBDs.

2_test

Id Subject Object Predicate Lexical cue
32604730-24121034-51943962 824-826 24121034 denotes 18
T51478 824-826 24121034 denotes 18