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PMC:7352545 / 11353-12446 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T73 48-54 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T74 176-183 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T75 206-212 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T76 244-249 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T77 292-299 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T78 355-367 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T79 409-421 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T80 433-436 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T81 458-466 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T82 489-497 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T83 524-532 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T84 614-627 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T85 635-647 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T86 660-667 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T87 722-727 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T88 749-757 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T89 776-797 Body_part denotes endoplasmic reticulum http://purl.org/sig/ont/fma/fma63842
T90 799-801 Body_part denotes ER http://purl.org/sig/ont/fma/fma63842
T91 834-855 Body_part denotes endoplasmic reticulum http://purl.org/sig/ont/fma/fma63842
T92 875-886 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577
T93 900-903 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T94 904-910 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
449 423-424 Gene denotes M Gene:43740571
450 747-748 Gene denotes E Gene:43740570
451 487-488 Gene denotes E Gene:43740570
452 369-370 Gene denotes E Gene:43740570
453 741-742 Gene denotes M Gene:43740571
454 606-607 Gene denotes M Gene:43740571
455 481-482 Gene denotes M Gene:43740571
456 603-604 Gene denotes N Gene:43740575
457 478-479 Gene denotes N Gene:43740575
458 427-428 Gene denotes N Gene:43740575
459 230-238 Gene denotes envelope Gene:43740570
460 95-103 Gene denotes envelope Gene:43740570
461 311-320 Species denotes 2019-nCoV Tax:2697049
462 322-332 Species denotes SARS-CoV-2 Tax:2697049
463 345-350 Gene denotes spike Gene:43740568

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 322-330 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T120 121-122 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T121 123-128 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T122 134-135 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 149-152 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T124 153-154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 214-221 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T126 343-344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 391-392 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T128 393-401 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T129 651-652 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 722-727 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T131 803-811 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T132 965-970 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T263 176-183 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T264 244-249 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T265 292-299 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T266 355-367 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T267 409-421 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T268 458-466 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T269 489-497 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T270 524-532 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T271 614-627 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T272 635-647 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T273 660-667 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T274 749-757 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T11 1000-1011 http://purl.obolibrary.org/obo/GO_0006810 denotes transported
T12 1082-1092 http://purl.obolibrary.org/obo/GO_0006887 denotes exocytosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T95 0-120 Sentence denotes Generally, viral families are determined by the genome structure and virion morphologies of an envelope or naked capsid.
T96 121-213 Sentence denotes A virus with a naked capsid has a coat of nucleocapsid protein (N) coating the viral genome.
T97 214-306 Sentence denotes Viruses with an envelope have lipid envelopes further surrounding the outmost protein layer.
T98 307-442 Sentence denotes The 2019-nCoV (SARS-CoV-2) contains a spike (S) glycoprotein, E, dimeric HE enzyme, a membrane matrix glycoprotein (M), N and RNA [16].
T99 443-592 Sentence denotes The structural proteins are the S, N, M and E proteins, while the non-structural proteins are proteases such as Nsp3 and Nsp5 and RdRp such as Nsp12.
T100 593-733 Sentence denotes Among the N, M and S glycoproteins, the S glycoprotein is a fusion protein that recognizes the host receptor and enters the host cells [17].
T101 734-895 Sentence denotes The S, M and E proteins anchored into the endoplasmic reticulum (ER) membrane are trafficked to the endoplasmic reticulum–Golgi intermediate compartment (ERGIC).
T102 896-981 Sentence denotes The RNA genome linked with nucleoprotein buds into the ERGIC to form virus particles.
T103 982-1093 Sentence denotes Assembled virions transported to the vesicular surface are released to the extracellular milieu via exocytosis.

2_test

Id Subject Object Predicate Lexical cue
32604730-32290293-51943960 438-440 32290293 denotes 16
32604730-32288441-51943961 729-731 32288441 denotes 17
T87050 438-440 32290293 denotes 16
T12608 729-731 32288441 denotes 17