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PMC:7347402 / 18681-22292 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T67 128-134 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T68 1433-1437 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T69 1501-1506 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T70 1570-1575 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T71 1639-1645 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T44 128-134 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T45 1433-1437 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T46 1501-1506 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T47 1570-1575 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T48 1639-1645 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
493 43-52 Disease denotes mortality MESH:D003643
509 939-955 Gene denotes Female 1 (ref) 1 Gene:7980
510 1828-1862 Gene denotes CRB-65 score 0 1 (ref) 1 (ref) 1–2 Gene:7980
511 1992-2006 Gene denotes <6.1 1 (ref) 1 Gene:7980
512 873-876 Gene denotes Age Gene:5973
513 1023-1038 Disease denotes symptoms  Fever MESH:D051271
514 1080-1085 Disease denotes Cough MESH:D003371
515 1241-1248 Disease denotes Fatigue MESH:D005221
516 1290-1299 Disease denotes Diarrhoea MESH:D003967
517 1365-1377 Disease denotes Hypertension MESH:D006973
518 1425-1445 Disease denotes Chronic lung disease MESH:D055370
519 1493-1514 Disease denotes Chronic heart disease MESH:D006331
520 1562-1583 Disease denotes Chronic liver disease MESH:D058625
521 1631-1653 Disease denotes Chronic kidney disease MESH:D051436
522 1701-1724 Disease denotes Cerebrovascular disease MESH:D002561
523 1772-1781 Disease denotes Carcinoma MESH:D009369
525 653-658 Disease denotes death MESH:D003643
532 306-309 Gene denotes age Gene:5973
533 105-108 Gene denotes age Gene:5973
534 120-142 Disease denotes chronic kidney disease MESH:D051436
535 144-167 Disease denotes cerebrovascular disease MESH:D002561
536 230-239 Disease denotes mortality MESH:D003643
537 559-568 Disease denotes mortality MESH:D003643
549 3185-3193 Species denotes patients Tax:9606
550 3300-3308 Species denotes patients Tax:9606
551 3377-3385 Species denotes patients Tax:9606
552 3459-3467 Species denotes patients Tax:9606
553 3558-3566 Species denotes patients Tax:9606
554 3150-3159 Disease denotes mortality MESH:D003643
555 3176-3184 Disease denotes COVID-19 MESH:C000657245
556 3291-3299 Disease denotes COVID-19 MESH:C000657245
557 3368-3376 Disease denotes COVID-19 MESH:C000657245
558 3450-3458 Disease denotes COVID-19 MESH:C000657245
559 3549-3557 Disease denotes COVID-19 MESH:C000657245
571 2184-2196 Species denotes participants Tax:9606
572 2345-2353 Species denotes patients Tax:9606
573 2575-2583 Species denotes patients Tax:9606
574 2740-2748 Species denotes patients Tax:9606
575 2958-2966 Species denotes patients Tax:9606
576 2142-2147 Disease denotes death MESH:D003643
577 2175-2183 Disease denotes COVID-19 MESH:C000657245
578 2376-2385 Disease denotes mortality MESH:D003643
579 2612-2621 Disease denotes mortality MESH:D003643
580 2773-2782 Disease denotes mortality MESH:D003643
581 2993-3002 Disease denotes mortality MESH:D003643

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T161 120-142 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T162 128-142 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T164 144-167 Disease denotes cerebrovascular disease http://purl.obolibrary.org/obo/MONDO_0011057
T165 169-172 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T166 381-384 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T167 429-432 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T168 1290-1299 Disease denotes Diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T169 1365-1377 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T170 1433-1445 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T171 1501-1514 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T172 1570-1583 Disease denotes liver disease http://purl.obolibrary.org/obo/MONDO_0005154
T173 1631-1653 Disease denotes Chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T174 1639-1653 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T176 1701-1724 Disease denotes Cerebrovascular disease http://purl.obolibrary.org/obo/MONDO_0011057
T177 1772-1781 Disease denotes Carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T178 1828-1831 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T179 2175-2183 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T180 2228-2231 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T181 2754-2757 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T182 2823-2826 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T183 2972-2975 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T184 3043-3046 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T185 3176-3184 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T186 3224-3227 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T187 3291-3299 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T188 3368-3376 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T189 3400-3403 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T190 3450-3458 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T191 3475-3478 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764
T192 3549-3557 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T193 3574-3577 Disease denotes CRB http://purl.obolibrary.org/obo/MONDO_0008764

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T193 110-114 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T194 110-114 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T195 128-134 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T196 128-134 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T197 128-134 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T198 341-345 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T199 341-345 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T200 442-445 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T201 939-945 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T202 962-966 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T203 962-966 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T204 1433-1437 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T205 1433-1437 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T206 1501-1506 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T207 1501-1506 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T208 1501-1506 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T209 1501-1506 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T210 1570-1575 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T211 1570-1575 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T212 1639-1645 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T213 1639-1645 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T214 1639-1645 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T215 1913-1916 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T216 2279-2281 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2a
T217 2877-2880 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T218 3053-3056 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3–4
T219 3252-3253 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T220 3329-3330 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T221 3473-3474 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T222 3572-3573 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T46 110-114 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T47 341-345 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T56 120-142 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T57 1033-1038 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T58 1080-1085 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T59 1241-1248 Phenotype denotes Fatigue http://purl.obolibrary.org/obo/HP_0012378
T60 1290-1299 Phenotype denotes Diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T61 1365-1377 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T62 1425-1445 Phenotype denotes Chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T63 1570-1583 Phenotype denotes liver disease http://purl.obolibrary.org/obo/HP_0001392
T64 1631-1653 Phenotype denotes Chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622
T65 1772-1781 Phenotype denotes Carcinoma http://purl.obolibrary.org/obo/HP_0030731

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T158 0-52 Sentence denotes Factors associated with in-hospital 28-day mortality
T159 53-240 Sentence denotes The univariable Cox regression analysis showed that age, male sex, chronic kidney disease, cerebrovascular disease, CRB-65 score and FBG were associated with in-hospital 28-day mortality.
T160 241-579 Sentence denotes The multivariable Cox regression analysis further suggested that age (HR 1.02 [95% CI 1.00, 1.04]), male sex (HR 1.75 [95% CI 1.17, 2.60]), CRB-65 score 1–2 (HR 2.68 [95% CI 1.56, 4.59]), CRB-65 score 3–4 (HR 5.25 [95% CI 2.05, 13.43]) and FBG ≥7.0 mmol/l (HR 2.30 [95% CI 1.49, 3.55]) were independent predictors for mortality (Table 2).
T161 580-693 Sentence denotes Table 2 Univariable and multivariable analyses of various indicators for death within 28 days in all participants
T162 694-777 Sentence denotes Univariable analysis HR (95% CI) p value Multivariable analysis HR (95% CI) p value
T163 778-786 Sentence denotes Hospital
T164 787-820 Sentence denotes  Wuhan Red Cross Hospital 1 (ref)
T165 821-872 Sentence denotes  Wuhan Union West Hospital 0.85 (0.57, 1.28) 0.4347
T166 873-934 Sentence denotes Age, years 1.05 (1.03, 1.06) <0.0001 1.02 (1.00, 1.04) 0.0252
T167 935-961 Sentence denotes Sex Female 1 (ref) 1 (ref)
T168 962-1016 Sentence denotes Male 2.03 (1.37, 3.01) 0.0004 1.75 (1.17, 2.60) 0.0060
T169 1017-1031 Sentence denotes Onset symptoms
T170 1032-1049 Sentence denotes  Fever No 1 (ref)
T171 1050-1078 Sentence denotes Yes 0.84 (0.48, 1.44) 0.5191
T172 1079-1096 Sentence denotes  Cough No 1 (ref)
T173 1097-1125 Sentence denotes Yes 0.71 (0.47, 1.08) 0.1125
T174 1126-1151 Sentence denotes  Expectoration No 1 (ref)
T175 1152-1180 Sentence denotes Yes 1.06 (0.71, 1.58) 0.7788
T176 1181-1210 Sentence denotes  Muscular soreness No 1 (ref)
T177 1211-1239 Sentence denotes Yes 0.92 (0.57, 1.47) 0.7256
T178 1240-1259 Sentence denotes  Fatigue No 1 (ref)
T179 1260-1288 Sentence denotes Yes 1.07 (0.72, 1.60) 0.7386
T180 1289-1310 Sentence denotes  Diarrhoea No 1 (ref)
T181 1311-1339 Sentence denotes Yes 0.83 (0.48, 1.44) 0.5124
T182 1340-1363 Sentence denotes Past history of disease
T183 1364-1393 Sentence denotes  Hypertension Without 1 (ref)
T184 1394-1423 Sentence denotes With 1.27 (0.85, 1.89) 0.2493
T185 1424-1461 Sentence denotes  Chronic lung disease Without 1 (ref)
T186 1462-1491 Sentence denotes With 1.12 (0.41, 3.03) 0.8285
T187 1492-1530 Sentence denotes  Chronic heart disease Without 1 (ref)
T188 1531-1560 Sentence denotes With 1.34 (0.75, 2.39) 0.3151
T189 1561-1599 Sentence denotes  Chronic liver disease Without 1 (ref)
T190 1600-1629 Sentence denotes With 0.95 (0.30, 2.99) 0.9296
T191 1630-1669 Sentence denotes  Chronic kidney disease Without 1 (ref)
T192 1670-1699 Sentence denotes With 2.28 (1.00, 5.19) 0.0496
T193 1700-1740 Sentence denotes  Cerebrovascular disease Without 1 (ref)
T194 1741-1770 Sentence denotes With 2.82 (1.31, 6.05) 0.0080
T195 1771-1797 Sentence denotes  Carcinoma Without 1 (ref)
T196 1798-1827 Sentence denotes With 1.81 (0.92, 3.58) 0.0876
T197 1828-1858 Sentence denotes CRB-65 score 0 1 (ref) 1 (ref)
T198 1859-1912 Sentence denotes 1–2 4.35 (2.81, 6.72) <0.0001 2.68 (1.56–4.59) 0.0003
T199 1913-1969 Sentence denotes 3–4 13.80 (5.99, 31.80) <0.0001 5.25 (2.05–13.43) 0.0005
T200 1970-2012 Sentence denotes Admission FBG, mmol/l <6.1 1 (ref) 1 (ref)
T201 2013-2070 Sentence denotes 6.1–6.9 2.06 (1.20, 3.54) 0.0087 1.71 (0.99, 2.94) 0.0524
T202 2071-2126 Sentence denotes ≥7.0 3.54 (2.33, 5.38) <0.0001 2.30 (1.49, 3.55) 0.0002
T203 2127-2330 Sentence denotes The cumulative death rate within 28 days in all COVID-19 participants stratified in terms of FBG and CRB-65 score at admission overall is shown in Fig. 2a (ptrend < 0.0001) and Fig. 2b (ptrend = 0.0020).
T204 2331-2560 Sentence denotes Compared with patients with FBG <6.1 mmol/l, mortality within 28 days was higher in those with FBG of 6.1–6.9 mmol/l (crude HR 2.06 [95% CI 1.20, 3.54]) and ≥7.0 mmol/l (crude HR 3.54 [95% CI 2.33, 5.38]), respectively (Table 2).
T205 2561-2714 Sentence denotes Compared with patients with FBG of 6.1–6.9 mmol/l, mortality within 28 days was higher in those with FBG ≥7.0 mmol/l (crude HR 1.72 [95% CI 1.05, 2.84]).
T206 2715-2943 Sentence denotes Meanwhile, compared with patients with CRB-65 score of 0, mortality within 28 days was higher in those with CRB-65 of 1–2 (crude HR 4.35 [95% CI 2.81, 6.72]) and 3–4 (crude HR 13.80 [95% CI 5.99, 31.80]), respectively (Table 2).
T207 2944-3093 Sentence denotes Compared with patients with CRB-65 score of 1–2, mortality within 28 days was higher in those with CRB-65 of 3–4 (crude HR 3.18 [95% CI 1.46, 6.89]).
T208 3094-3611 Sentence denotes Fig. 2 Kaplan–Meier survival curves (showing cumulative mortality and 95% CI) for COVID-19 patients stratified in terms of FBG or CRB-65 score at admission. (a) Kaplan–Meier survival curves of all COVID-19 patients stratified by FBG; (b) Kaplan–Meier survival curves of all COVID-19 patients stratified by CRB-65 score; (c) Kaplan–Meier survival curves of COVID-19 patients with a CRB-65 score of 0, stratified by FBG; (d) Kaplan–Meier survival curves of COVID-19 patients with a CRB-65 score of >0, stratified by FBG

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T41258 1433-1437 UBERON:0002048 denotes lung
T89570 1501-1506 UBERON:0000948 denotes heart
T34811 1570-1575 UBERON:0002107 denotes liver
T25028 1639-1645 UBERON:0002113 denotes kidney
T1863 1701-1716 UBERON:0002037 denotes Cerebrovascular
T37596 2852-2860 SP_7 denotes [95% CI
T179 2884-2887 PR:Q9SA52 denotes ude
T180 2932-2940 SP_7 denotes (Table
T13792 2957-2960 PR:Q9SA52 denotes pa
T182 3031-3039 SP_7 denotes those w
T183 3056-3059 PR:Q9SA52 denotes (c
T184 3176-3184 SP_7 denotes COVID-19
T185 3224-3227 PR:Q9SA52 denotes CRB
T88719 3291-3299 SP_7 denotes COVID-19
T187 3368-3376 SP_7 denotes COVID-19
T10030 3400-3403 PR:Q9SA52 denotes CRB
T189 3450-3458 SP_7 denotes COVID-19
T190 3475-3478 PR:Q9SA52 denotes CRB
T27944 3549-3557 SP_7 denotes COVID-19
T192 3574-3577 PR:Q9SA52 denotes CRB