PMC:7346000 / 36890-37302 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T94","span":{"begin":61,"end":65},"obj":"Body_part"},{"id":"T95","span":{"begin":93,"end":104},"obj":"Body_part"},{"id":"T96","span":{"begin":127,"end":136},"obj":"Body_part"}],"attributes":[{"id":"A94","pred":"fma_id","subj":"T94","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A95","pred":"fma_id","subj":"T95","obj":"http://purl.org/sig/ont/fma/fma9603"},{"id":"A96","pred":"fma_id","subj":"T96","obj":"http://purl.org/sig/ont/fma/fma9600"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PubTator","denotations":[{"id":"1363","span":{"begin":346,"end":358},"obj":"Species"},{"id":"1430","span":{"begin":10,"end":14},"obj":"Disease"},{"id":"1431","span":{"begin":27,"end":51},"obj":"Disease"},{"id":"1432","span":{"begin":66,"end":79},"obj":"Disease"},{"id":"1433","span":{"begin":81,"end":104},"obj":"Disease"},{"id":"1434","span":{"begin":106,"end":118},"obj":"Disease"},{"id":"1435","span":{"begin":120,"end":148},"obj":"Disease"}],"attributes":[{"id":"A1363","pred":"tao:has_database_id","subj":"1363","obj":"Tax:746128"},{"id":"A1430","pred":"tao:has_database_id","subj":"1430","obj":"MESH:D012128"},{"id":"A1431","pred":"tao:has_database_id","subj":"1431","obj":"MESH:D009190"},{"id":"A1432","pred":"tao:has_database_id","subj":"1432","obj":"MESH:D008218"},{"id":"A1433","pred":"tao:has_database_id","subj":"1433","obj":"MESH:D050031"},{"id":"A1434","pred":"tao:has_database_id","subj":"1434","obj":"MESH:D006973"},{"id":"A1435","pred":"tao:has_database_id","subj":"1435","obj":"MESH:D011470"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T307","span":{"begin":10,"end":14},"obj":"Disease"},{"id":"T308","span":{"begin":27,"end":51},"obj":"Disease"},{"id":"T310","span":{"begin":81,"end":104},"obj":"Disease"},{"id":"T311","span":{"begin":93,"end":104},"obj":"Disease"},{"id":"T312","span":{"begin":106,"end":118},"obj":"Disease"},{"id":"T313","span":{"begin":120,"end":148},"obj":"Disease"}],"attributes":[{"id":"A307","pred":"mondo_id","subj":"T307","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A308","pred":"mondo_id","subj":"T308","obj":"http://purl.obolibrary.org/obo/MONDO_0018881"},{"id":"A309","pred":"mondo_id","subj":"T308","obj":"http://purl.obolibrary.org/obo/MONDO_0044873"},{"id":"A310","pred":"mondo_id","subj":"T310","obj":"http://purl.obolibrary.org/obo/MONDO_0007699"},{"id":"A311","pred":"mondo_id","subj":"T311","obj":"http://purl.obolibrary.org/obo/MONDO_0004126"},{"id":"A312","pred":"mondo_id","subj":"T312","obj":"http://purl.obolibrary.org/obo/MONDO_0005044"},{"id":"A313","pred":"mondo_id","subj":"T313","obj":"http://purl.obolibrary.org/obo/MONDO_0010811"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T283","span":{"begin":53,"end":56},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T284","span":{"begin":59,"end":65},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T285","span":{"begin":346,"end":347},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T285","span":{"begin":170,"end":172},"obj":"Chemical"},{"id":"T286","span":{"begin":235,"end":237},"obj":"Chemical"},{"id":"T287","span":{"begin":259,"end":261},"obj":"Chemical"}],"attributes":[{"id":"A285","pred":"chebi_id","subj":"T285","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A286","pred":"chebi_id","subj":"T286","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A287","pred":"chebi_id","subj":"T287","obj":"http://purl.obolibrary.org/obo/CHEBI_33696"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T44","span":{"begin":185,"end":194},"obj":"http://purl.obolibrary.org/obo/GO_0046903"},{"id":"T45","span":{"begin":247,"end":256},"obj":"http://purl.obolibrary.org/obo/GO_0046903"},{"id":"T46","span":{"begin":391,"end":400},"obj":"http://purl.obolibrary.org/obo/GO_0046903"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T54","span":{"begin":170,"end":172},"obj":"GlycoEpitope"},{"id":"T55","span":{"begin":235,"end":237},"obj":"GlycoEpitope"}],"attributes":[{"id":"A54","pred":"glyco_epitope_db_id","subj":"T54","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A55","pred":"glyco_epitope_db_id","subj":"T55","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T101","span":{"begin":27,"end":51},"obj":"Phenotype"},{"id":"T102","span":{"begin":66,"end":79},"obj":"Phenotype"},{"id":"T103","span":{"begin":81,"end":104},"obj":"Phenotype"},{"id":"T104","span":{"begin":106,"end":118},"obj":"Phenotype"},{"id":"T105","span":{"begin":120,"end":148},"obj":"Phenotype"}],"attributes":[{"id":"A101","pred":"hp_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/HP_0002863"},{"id":"A102","pred":"hp_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/HP_0100827"},{"id":"A103","pred":"hp_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/HP_0000872"},{"id":"A104","pred":"hp_id","subj":"T104","obj":"http://purl.obolibrary.org/obo/HP_0000822"},{"id":"A105","pred":"hp_id","subj":"T105","obj":"http://purl.obolibrary.org/obo/HP_0008711"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}

{"project":"LitCovid-sentences","denotations":[{"id":"T202","span":{"begin":0,"end":412},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"France (1)ARDS [57] 74/M Myelodysplastic syndrome, CD8 + T-cell lymphocytosis, Hashimoto’s thyroiditis, hypertension, benign prostatic hypertrophy Putative No First GM on tracheal secretion = Negative First qPCR = Positive Second GM tracheal secretion = NA Second qPCR = Positive Direct smear of the second sample = branched septate hyphae A. fumigatus, culture of the second tracheal secretion None Died"}