PMC:7346000 / 13734-14292
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T41 | 199-202 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T42 | 519-532 | Body_part | denotes | immune system | http://purl.org/sig/ont/fma/fma9825 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 519-532 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 392 | 72-80 | Species | denotes | patients | Tax:9606 |
| 393 | 152-160 | Species | denotes | patients | Tax:9606 |
| 394 | 193-198 | Species | denotes | human | Tax:9606 |
| 395 | 199-213 | Species | denotes | gut microbiome | Tax:749906 |
| 396 | 143-151 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 397 | 483-509 | Disease | denotes | invasive fungal infections | MESH:D000072742 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T144 | 143-151 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T145 | 492-509 | Disease | denotes | fungal infections | http://purl.obolibrary.org/obo/MONDO_0002041 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T96 | 193-198 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T97 | 199-202 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T98 | 199-202 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T99 | 199-202 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T100 | 217-218 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T101 | 251-259 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
| T102 | 280-288 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
| T103 | 519-532 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T83 | 51-61 | Chemical | denotes | antibiotic | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T84 | 97-108 | Chemical | denotes | antibiotics | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T85 | 346-357 | Chemical | denotes | antibiotics | http://purl.obolibrary.org/obo/CHEBI_33281 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T35 | 483-509 | Phenotype | denotes | invasive fungal infections | http://purl.obolibrary.org/obo/HP_0020101 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T71 | 0-182 | Sentence | denotes | Although detailed case series have not reported on antibiotic use among patients, broad-spectrum antibiotics are presumed to be used in 75% of COVID-19 patients admitted to ICU [49]. |
| T72 | 183-558 | Sentence | denotes | Since the human gut microbiome is a highly complicated structure of bacteria and fungi, although bacteria are the most diverse constituents, the administration of antibiotics results in perturbation of microbiome steady-state composition, which allows fungi to thrive, and may predispose the host to invasive fungal infections once the immune system becomes impaired [65,66]. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32599813-30987351-60095113 | 551-553 | 30987351 | denotes | 65 |
| 32599813-31222314-60095114 | 554-556 | 31222314 | denotes | 66 |