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PMC:7344504 / 837-2041 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
50 292-300 Species denotes patients Tax:9606
51 388-396 Species denotes patients Tax:9606
52 424-432 Species denotes patients Tax:9606
53 454-462 Species denotes patients Tax:9606
54 704-712 Species denotes patients Tax:9606
55 1113-1134 Species denotes Aspergillus fumigatus Tax:746128
56 1140-1150 Species denotes SARS-CoV-2 Tax:2697049
57 1176-1183 Species denotes patient Tax:9606
58 989-994 Chemical denotes azole MESH:D001393
59 1097-1102 Chemical denotes azole MESH:D001393
60 33-57 Disease denotes coronavirus disease 2019 MESH:C000657245
61 59-67 Disease denotes COVID-19 MESH:C000657245
62 135-167 Disease denotes invasive pulmonary aspergillosis MESH:D055744
63 177-186 Disease denotes infection MESH:D007239
64 192-200 Disease denotes COVID-19 MESH:C000657245
65 212-235 Disease denotes pulmonary aspergillosis MESH:D055732
66 343-366 Disease denotes pulmonary abnormalities MESH:D008171
67 767-799 Disease denotes invasive pulmonary aspergillosis MESH:D055744
68 844-853 Disease denotes mortality MESH:D003643
69 945-967 Disease denotes invasive aspergillosis MESH:D055744
70 972-980 Disease denotes infected MESH:D007239
71 1041-1050 Disease denotes mortality MESH:D003643

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 33-57 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T8 59-67 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 154-167 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T10 177-186 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 192-200 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 222-235 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T13 237-241 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T14 507-511 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T15 588-592 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T16 670-679 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T17 687-696 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T18 786-799 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 945-967 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T20 954-967 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T21 1140-1148 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 246-247 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 421-423 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T9 649-652 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 713-716 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1138-1139 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 169-172 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T10 864-867 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T12 989-994 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452
T13 1097-1102 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-191 Sentence denotes There have been suggestions that coronavirus disease 2019 (COVID-19) might increase the risk of superinfections [1] and, particularly, invasive pulmonary aspergillosis (IPA) co-infection [2].
T12 192-367 Sentence denotes COVID-19-associated pulmonary aspergillosis (CAPA) is a recently described disease entity affecting patients in intensive care unit (ICUs) with severe pulmonary abnormalities.
T13 368-554 Sentence denotes Small cohorts of 31 patients in the Netherlands [3], 27 patients in France [4] and 19 patients in Germany [5] have been published, showing CAPA rates of 19.4%, 33% and 26%, respectively.
T14 555-622 Sentence denotes An additional two fatal cases of CAPA were recently reported [6,7].
T15 623-878 Sentence denotes The numbers resemble what has been observed in influenza, where influenza in ICU patients has been identified as an independent risk factor for invasive pulmonary aspergillosis and which is associated with an even higher mortality rate than IPA alone [8].
T16 879-1067 Sentence denotes In addition, in the Netherlands, an estimated 11.3% of cases with invasive aspergillosis are infected with an azole-resistant isolate [9], potentially increasing mortality to 50–100% [10].
T17 1068-1204 Sentence denotes We present the first case of azole-resistant Aspergillus fumigatus in a SARS-CoV-2-positive immunocompetent patient admitted to the ICU.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 135-167 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T2 169-172 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T3 767-799 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T4 864-867 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

2_test

Id Subject Object Predicate Lexical cue
32517166-32361747-60114378 113-114 32361747 denotes 1
32517166-32396381-60114379 417-418 32396381 denotes 3
32517166-32339350-60114380 475-476 32339350 denotes 5
32517166-30076119-60114381 875-876 30076119 denotes 8
32517166-32297377-60114382 1014-1015 32297377 denotes 9