> top > docs > PMC:7344504 > spans > 12084-13299 > annotations

PMC:7344504 / 12084-13299 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 0-5 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T23 214-219 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T24 320-325 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T25 577-582 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 0-5 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T16 214-219 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T17 320-325 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T18 577-582 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
328 105-113 Species denotes patients Tax:9606
329 180-188 Species denotes patients Tax:9606
330 637-644 Species denotes patient Tax:9606
331 1044-1052 Species denotes patients Tax:9606
332 455-466 Species denotes Aspergillus Tax:746128
333 6-19 Chemical denotes galactomannan MESH:C012990
334 220-233 Chemical denotes galactomannan MESH:C012990
335 326-339 Chemical denotes galactomannan MESH:C012990
336 436-446 Chemical denotes β-d-glucan
337 583-593 Chemical denotes β-d-glucan
338 719-729 Chemical denotes β-d-glucan
339 1075-1085 Chemical denotes β-d-glucan
340 136-158 Disease denotes invasive aspergillosis MESH:D055744
341 543-551 Disease denotes COVID-19 MESH:C000657245
342 692-707 Disease denotes invasive fungal MESH:D000072742
343 895-918 Disease denotes invasive fungal disease MESH:D000072742
344 1003-1025 Disease denotes invasive aspergillosis MESH:D055744
345 1029-1043 Disease denotes critically ill MESH:D016638

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T44 136-158 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T45 145-158 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T46 543-551 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 1003-1025 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T48 1012-1025 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T83 20-27 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T84 28-31 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T85 49-50 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 260-263 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T87 279-281 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T88 489-495 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T89 664-665 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 730-737 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T91 741-742 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 764-767 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T93 875-887 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T94 963-964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 1211-1213 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T93 6-19 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T94 220-233 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T95 326-339 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T96 440-446 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T97 497-500 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T98 536-539 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T100 587-593 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T101 723-729 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T102 1071-1074 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T103 1079-1085 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 6-19 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T4 220-233 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T5 326-339 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T96 0-167 Sentence denotes Serum galactomannan testing has been shown to be a fairly sensitive diagnostic tool (70%) in neutropenic patients with pathology-proven invasive aspergillosis [27,28].
T97 168-423 Sentence denotes However, in patients who are non-neutropenic, serum galactomannan sensitivity of around 25% has been reported [27], which may explain the low number of serum galactomannan positive findings in recently published case reports [6,7] and case series [3,4,5].
T98 424-576 Sentence denotes The role of β-d-glucan and the Aspergillus-specific lateral flow device (LFD) as an adjunct to the diagnosis of IPA in COVID-19 is not yet clear [2,23].
T99 577-671 Sentence denotes Serum β-d-glucan was persistently strongly positive in this patient over the course of a week.
T100 672-919 Sentence denotes The specificity for invasive fungal disease of β-d-glucan testing in a mixed ICU population has been shown to be high (86%), with two consecutive positive results [29] compared to those with only fungal colonization and no invasive fungal disease.
T101 920-1070 Sentence denotes In addition, multiple other studies report a good sensitivity for the diagnosis of invasive aspergillosis in critically ill patients [30,31,32,33,34].
T102 1071-1215 Sentence denotes BAL β-d-glucan in the ICU setting is, however, not recommended, due to its poor specificity and confounders causing false positive results [35].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 536-539 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

2_test

Id Subject Object Predicate Lexical cue
32517166-17885264-60114400 160-162 17885264 denotes 27
32517166-11015433-60114401 163-165 11015433 denotes 28
32517166-17885264-60114402 279-281 17885264 denotes 27
32517166-32396381-60114403 416-417 32396381 denotes 3
32517166-32339350-60114404 420-421 32339350 denotes 5
32517166-31361683-60114405 572-574 31361683 denotes 23
32517166-28384600-60114406 836-838 28384600 denotes 29
32517166-20825441-60114407 1054-1056 20825441 denotes 30
32517166-21811868-60114408 1057-1059 21811868 denotes 31
32517166-30015290-60114409 1060-1062 30015290 denotes 32
32517166-21880959-60114410 1063-1065 21880959 denotes 33
32517166-27475024-60114411 1066-1068 27475024 denotes 34