PMC:7341831 / 5957-6671 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T23","span":{"begin":23,"end":27},"obj":"Body_part"},{"id":"T24","span":{"begin":196,"end":200},"obj":"Body_part"},{"id":"T25","span":{"begin":563,"end":574},"obj":"Body_part"},{"id":"T26","span":{"begin":631,"end":637},"obj":"Body_part"},{"id":"T27","span":{"begin":676,"end":701},"obj":"Body_part"},{"id":"T28","span":{"begin":696,"end":701},"obj":"Body_part"}],"attributes":[{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma7154"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma62860"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma50720"},{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma62499"},{"id":"A28","pred":"fma_id","subj":"T28","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T18","span":{"begin":23,"end":27},"obj":"Body_part"},{"id":"T19","span":{"begin":196,"end":200},"obj":"Body_part"},{"id":"T20","span":{"begin":631,"end":637},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A19","pred":"uberon_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/UBERON_0000033"},{"id":"A20","pred":"uberon_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/UBERON_0001637"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"172","span":{"begin":184,"end":195},"obj":"Species"},{"id":"173","span":{"begin":75,"end":78},"obj":"Chemical"},{"id":"174","span":{"begin":523,"end":539},"obj":"Disease"},{"id":"175","span":{"begin":653,"end":672},"obj":"Disease"}],"attributes":[{"id":"A172","pred":"tao:has_database_id","subj":"172","obj":"Tax:746128"},{"id":"A173","pred":"tao:has_database_id","subj":"173","obj":"MESH:D006371"},{"id":"A174","pred":"tao:has_database_id","subj":"174","obj":"MESH:D001996"},{"id":"A175","pred":"tao:has_database_id","subj":"175","obj":"MESH:D008679"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T52","span":{"begin":284,"end":287},"obj":"Disease"},{"id":"T53","span":{"begin":523,"end":539},"obj":"Disease"}],"attributes":[{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0004277"},{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0005682"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T45","span":{"begin":23,"end":27},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T46","span":{"begin":23,"end":27},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T47","span":{"begin":29,"end":30},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T48","span":{"begin":168,"end":169},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T49","span":{"begin":196,"end":200},"obj":"http://purl.obolibrary.org/obo/UBERON_0000033"},{"id":"T50","span":{"begin":196,"end":200},"obj":"http://www.ebi.ac.uk/efo/EFO_0000964"},{"id":"T51","span":{"begin":616,"end":617},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T52","span":{"begin":631,"end":637},"obj":"http://purl.obolibrary.org/obo/UBERON_0001637"},{"id":"T53","span":{"begin":631,"end":637},"obj":"http://www.ebi.ac.uk/efo/EFO_0000814"},{"id":"T54","span":{"begin":685,"end":695},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T55","span":{"begin":696,"end":701},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T58","span":{"begin":284,"end":287},"obj":"Chemical"},{"id":"T59","span":{"begin":591,"end":597},"obj":"Chemical"}],"attributes":[{"id":"A58","pred":"chebi_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/CHEBI_27565"},{"id":"A59","pred":"chebi_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/CHEBI_5054"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T6","span":{"begin":460,"end":470},"obj":"http://purl.obolibrary.org/obo/GO_0000917"},{"id":"T7","span":{"begin":662,"end":672},"obj":"http://purl.obolibrary.org/obo/GO_0036074"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T53","span":{"begin":1,"end":28},"obj":"Sentence"},{"id":"T54","span":{"begin":29,"end":31},"obj":"Sentence"},{"id":"T55","span":{"begin":32,"end":88},"obj":"Sentence"},{"id":"T56","span":{"begin":89,"end":167},"obj":"Sentence"},{"id":"T57","span":{"begin":168,"end":170},"obj":"Sentence"},{"id":"T58","span":{"begin":171,"end":295},"obj":"Sentence"},{"id":"T59","span":{"begin":296,"end":298},"obj":"Sentence"},{"id":"T60","span":{"begin":299,"end":519},"obj":"Sentence"},{"id":"T61","span":{"begin":520,"end":522},"obj":"Sentence"},{"id":"T62","span":{"begin":523,"end":587},"obj":"Sentence"},{"id":"T63","span":{"begin":588,"end":590},"obj":"Sentence"},{"id":"T64","span":{"begin":591,"end":652},"obj":"Sentence"},{"id":"T65","span":{"begin":653,"end":714},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T91","span":{"begin":23,"end":27},"obj":"UBERON:0002048"},{"id":"T92","span":{"begin":52,"end":58},"obj":"NCBITaxon:4751"},{"id":"T93","span":{"begin":75,"end":76},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T94","span":{"begin":147,"end":153},"obj":"NCBITaxon:4751"},{"id":"T95","span":{"begin":184,"end":195},"obj":"NCBITaxon:5052"},{"id":"T96","span":{"begin":196,"end":200},"obj":"UBERON:0000033"},{"id":"T97","span":{"begin":269,"end":275},"obj":"NCBITaxon:4751"},{"id":"T98","span":{"begin":545,"end":552},"obj":"UBERON:0003215"},{"id":"T99","span":{"begin":563,"end":574},"obj":"CL:0000775"},{"id":"T100","span":{"begin":576,"end":577},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T101","span":{"begin":591,"end":597},"obj":"CHEBI:5054;CHEBI:5054;UBERON:0010210"},{"id":"T102","span":{"begin":598,"end":605},"obj":"UBERON:0010210"},{"id":"T103","span":{"begin":631,"end":637},"obj":"UBERON:0001637"},{"id":"T104","span":{"begin":639,"end":640},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T105","span":{"begin":676,"end":684},"obj":"UBERON:0003215;CL:0000322"},{"id":"T106","span":{"begin":685,"end":695},"obj":"CL:0000322;UBERON:0000483"},{"id":"T107","span":{"begin":696,"end":701},"obj":"CL:0000322"},{"id":"T108","span":{"begin":703,"end":704},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T81207","span":{"begin":23,"end":27},"obj":"UBERON:0002048"},{"id":"T65437","span":{"begin":52,"end":58},"obj":"NCBITaxon:4751"},{"id":"T92241","span":{"begin":75,"end":76},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T64480","span":{"begin":147,"end":153},"obj":"NCBITaxon:4751"},{"id":"T74480","span":{"begin":184,"end":195},"obj":"NCBITaxon:5052"},{"id":"T31521","span":{"begin":196,"end":200},"obj":"UBERON:0000033"},{"id":"T29491","span":{"begin":269,"end":275},"obj":"NCBITaxon:4751"},{"id":"T83684","span":{"begin":545,"end":552},"obj":"UBERON:0003215"},{"id":"T62000","span":{"begin":563,"end":574},"obj":"CL:0000775"},{"id":"T43627","span":{"begin":576,"end":577},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T39112","span":{"begin":591,"end":597},"obj":"CHEBI:5054;CHEBI:5054;UBERON:0010210"},{"id":"T37990","span":{"begin":598,"end":605},"obj":"UBERON:0010210"},{"id":"T93077","span":{"begin":631,"end":637},"obj":"UBERON:0001637"},{"id":"T41475","span":{"begin":639,"end":640},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T29535","span":{"begin":676,"end":684},"obj":"UBERON:0003215;CL:0000322"},{"id":"T32471","span":{"begin":685,"end":695},"obj":"CL:0000322;UBERON:0000483"},{"id":"T46776","span":{"begin":696,"end":701},"obj":"CL:0000322"},{"id":"T9064","span":{"begin":703,"end":704},"obj":"CHEBI:51686;CHEBI:51686"}],"text":" Histopathology of the lung. A. Numerous hyphae and fungal spores shown by H\u0026E staining. Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x). B. Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x). C. Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x). D. Bronchopneumonia with alveoli filled by neutrophils (H\u0026E, 400x). E. Fibrin thrombi occluding a medium-sized artery (H\u0026E, 400x) F. Squamous metaplasia in alveolar epithelial cells (H\u0026E, 400x)."}