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PMC:7341831 / 5957-6671 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T23 23-27 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 196-200 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T25 563-574 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T26 631-637 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T27 676-701 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T28 696-701 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 23-27 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 196-200 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T20 631-637 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
172 184-195 Species denotes Aspergillus Tax:746128
173 75-78 Chemical denotes H&E MESH:D006371
174 523-539 Disease denotes Bronchopneumonia MESH:D001996
175 653-672 Disease denotes Squamous metaplasia MESH:D008679

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T52 284-287 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T53 523-539 Disease denotes Bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T45 23-27 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T46 23-27 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T47 29-30 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 168-169 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 196-200 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T50 196-200 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T51 616-617 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 631-637 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T53 631-637 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T54 685-695 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T55 696-701 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T58 284-287 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T59 591-597 Chemical denotes Fibrin http://purl.obolibrary.org/obo/CHEBI_5054

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 460-470 http://purl.obolibrary.org/obo/GO_0000917 denotes septations
T7 662-672 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T53 1-28 Sentence denotes Histopathology of the lung.
T54 29-31 Sentence denotes A.
T55 32-88 Sentence denotes Numerous hyphae and fungal spores shown by H&E staining.
T56 89-167 Sentence denotes Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x).
T57 168-170 Sentence denotes B.
T58 171-295 Sentence denotes Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x).
T59 296-298 Sentence denotes C.
T60 299-519 Sentence denotes Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x).
T61 520-522 Sentence denotes D.
T62 523-587 Sentence denotes Bronchopneumonia with alveoli filled by neutrophils (H&E, 400x).
T63 588-590 Sentence denotes E.
T64 591-652 Sentence denotes Fibrin thrombi occluding a medium-sized artery (H&E, 400x) F.
T65 653-714 Sentence denotes Squamous metaplasia in alveolar epithelial cells (H&E, 400x).

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T91 23-27 UBERON:0002048 denotes lung
T92 52-58 NCBITaxon:4751 denotes fungal
T93 75-76 CHEBI:51686;CHEBI:51686 denotes H
T94 147-153 NCBITaxon:4751 denotes fungal
T95 184-195 NCBITaxon:5052 denotes Aspergillus
T96 196-200 UBERON:0000033 denotes head
T97 269-275 NCBITaxon:4751 denotes fungal
T98 545-552 UBERON:0003215 denotes alveoli
T99 563-574 CL:0000775 denotes neutrophils
T100 576-577 CHEBI:51686;CHEBI:51686 denotes H
T101 591-597 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T102 598-605 UBERON:0010210 denotes thrombi
T103 631-637 UBERON:0001637 denotes artery
T104 639-640 CHEBI:51686;CHEBI:51686 denotes H
T105 676-684 UBERON:0003215;CL:0000322 denotes alveolar
T106 685-695 CL:0000322;UBERON:0000483 denotes epithelial
T107 696-701 CL:0000322 denotes cells
T108 703-704 CHEBI:51686;CHEBI:51686 denotes H
T81207 23-27 UBERON:0002048 denotes lung
T65437 52-58 NCBITaxon:4751 denotes fungal
T92241 75-76 CHEBI:51686;CHEBI:51686 denotes H
T64480 147-153 NCBITaxon:4751 denotes fungal
T74480 184-195 NCBITaxon:5052 denotes Aspergillus
T31521 196-200 UBERON:0000033 denotes head
T29491 269-275 NCBITaxon:4751 denotes fungal
T83684 545-552 UBERON:0003215 denotes alveoli
T62000 563-574 CL:0000775 denotes neutrophils
T43627 576-577 CHEBI:51686;CHEBI:51686 denotes H
T39112 591-597 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T37990 598-605 UBERON:0010210 denotes thrombi
T93077 631-637 UBERON:0001637 denotes artery
T41475 639-640 CHEBI:51686;CHEBI:51686 denotes H
T29535 676-684 UBERON:0003215;CL:0000322 denotes alveolar
T32471 685-695 CL:0000322;UBERON:0000483 denotes epithelial
T46776 696-701 CL:0000322 denotes cells
T9064 703-704 CHEBI:51686;CHEBI:51686 denotes H