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PMC:7341831 / 5947-6671 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T23 33-37 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 206-210 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T25 573-584 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T26 641-647 Body_part denotes artery http://purl.org/sig/ont/fma/fma50720
T27 686-711 Body_part denotes alveolar epithelial cells http://purl.org/sig/ont/fma/fma62499
T28 706-711 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 33-37 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 206-210 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T20 641-647 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
172 194-205 Species denotes Aspergillus Tax:746128
173 85-88 Chemical denotes H&E MESH:D006371
174 533-549 Disease denotes Bronchopneumonia MESH:D001996
175 663-682 Disease denotes Squamous metaplasia MESH:D008679

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T52 294-297 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T53 533-549 Disease denotes Bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T45 33-37 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T46 33-37 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T47 39-40 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 178-179 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 206-210 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T50 206-210 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T51 626-627 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 641-647 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T53 641-647 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T54 695-705 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T55 706-711 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T58 294-297 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T59 601-607 Chemical denotes Fibrin http://purl.obolibrary.org/obo/CHEBI_5054

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 470-480 http://purl.obolibrary.org/obo/GO_0000917 denotes septations
T7 672-682 http://purl.obolibrary.org/obo/GO_0036074 denotes metaplasia

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T52 0-9 Sentence denotes FIGURE 1:
T53 11-38 Sentence denotes Histopathology of the lung.
T54 39-41 Sentence denotes A.
T55 42-98 Sentence denotes Numerous hyphae and fungal spores shown by H&E staining.
T56 99-177 Sentence denotes Microscopic cavitation surrounded by numerous hypahes and fungal spores (40x).
T57 178-180 Sentence denotes B.
T58 181-305 Sentence denotes Well-defined Aspergillus head, allowing the visualization of phialides and conidia, with numerous fungal spores (PAS, 400x).
T59 306-308 Sentence denotes C.
T60 309-529 Sentence denotes Well-defined aspergillary structure showing conidiophore, aspergillary vesicle, phialides, and conidia, as well as several hyphae of regular diameter, some with septations and dichotomous branches (Gomori-Grocott, 400x).
T61 530-532 Sentence denotes D.
T62 533-597 Sentence denotes Bronchopneumonia with alveoli filled by neutrophils (H&E, 400x).
T63 598-600 Sentence denotes E.
T64 601-662 Sentence denotes Fibrin thrombi occluding a medium-sized artery (H&E, 400x) F.
T65 663-724 Sentence denotes Squamous metaplasia in alveolar epithelial cells (H&E, 400x).

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T91 33-37 UBERON:0002048 denotes lung
T92 62-68 NCBITaxon:4751 denotes fungal
T93 85-86 CHEBI:51686;CHEBI:51686 denotes H
T94 157-163 NCBITaxon:4751 denotes fungal
T95 194-205 NCBITaxon:5052 denotes Aspergillus
T96 206-210 UBERON:0000033 denotes head
T97 279-285 NCBITaxon:4751 denotes fungal
T98 555-562 UBERON:0003215 denotes alveoli
T99 573-584 CL:0000775 denotes neutrophils
T100 586-587 CHEBI:51686;CHEBI:51686 denotes H
T101 601-607 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T102 608-615 UBERON:0010210 denotes thrombi
T103 641-647 UBERON:0001637 denotes artery
T104 649-650 CHEBI:51686;CHEBI:51686 denotes H
T105 686-694 UBERON:0003215;CL:0000322 denotes alveolar
T106 695-705 CL:0000322;UBERON:0000483 denotes epithelial
T107 706-711 CL:0000322 denotes cells
T108 713-714 CHEBI:51686;CHEBI:51686 denotes H
T81207 33-37 UBERON:0002048 denotes lung
T65437 62-68 NCBITaxon:4751 denotes fungal
T92241 85-86 CHEBI:51686;CHEBI:51686 denotes H
T64480 157-163 NCBITaxon:4751 denotes fungal
T74480 194-205 NCBITaxon:5052 denotes Aspergillus
T31521 206-210 UBERON:0000033 denotes head
T29491 279-285 NCBITaxon:4751 denotes fungal
T83684 555-562 UBERON:0003215 denotes alveoli
T62000 573-584 CL:0000775 denotes neutrophils
T43627 586-587 CHEBI:51686;CHEBI:51686 denotes H
T39112 601-607 CHEBI:5054;CHEBI:5054;UBERON:0010210 denotes Fibrin
T37990 608-615 UBERON:0010210 denotes thrombi
T93077 641-647 UBERON:0001637 denotes artery
T41475 649-650 CHEBI:51686;CHEBI:51686 denotes H
T29535 686-694 UBERON:0003215;CL:0000322 denotes alveolar
T32471 695-705 CL:0000322;UBERON:0000483 denotes epithelial
T46776 706-711 CL:0000322 denotes cells
T9064 713-714 CHEBI:51686;CHEBI:51686 denotes H