PMC:7341831 / 10454-11327
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T43 | 337-341 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T34 | 337-341 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 274 | 44-51 | Species | denotes | patient | Tax:9606 |
| 275 | 354-356 | Chemical | denotes | GM | MESH:C012990 |
| 276 | 64-73 | Disease | denotes | pneumonia | MESH:D011014 |
| 277 | 90-98 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 278 | 516-524 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 279 | 646-667 | Disease | denotes | SARS-CoV-2 infections | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T85 | 64-73 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T86 | 90-98 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T87 | 516-524 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T88 | 646-654 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T89 | 646-650 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T90 | 657-667 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T90 | 25-26 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T91 | 42-43 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T92 | 106-107 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T93 | 337-341 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T94 | 337-341 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T95 | 437-438 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T96 | 479-480 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T97 | 803-804 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T86 | 35-38 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T88 | 108-112 | Chemical | denotes | gold | http://purl.obolibrary.org/obo/CHEBI_29287|http://purl.obolibrary.org/obo/CHEBI_30050 |
| T90 | 183-186 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T92 | 354-356 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T94 | 632-635 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T96 | 753-756 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T7 | 354-356 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T92 | 0-99 | Sentence | denotes | In conclusion, we report a case of IPA in a patient with severe pneumonia associated with COVID-19. |
| T93 | 100-302 | Sentence | denotes | Using a gold standard method (histopathology) in our case series, the frequency of IPA was lower, as compared to that of cases published elsewhere; possible overestimation might be due to contamination. |
| T94 | 303-496 | Sentence | denotes | In our case, no CT imaging of the lung, sequential GM, or culture for fungus was performed, thus reinforcing the role of autopsies as a form of postmortem surveillance of such a severe disease. |
| T95 | 497-700 | Sentence | denotes | As the outbreak of COVID-19 continues to spread around the world, further reports are needed to assess the occurrence and frequency of IPA in severe SARS-CoV-2 infections, and their clinical interaction. |
| T96 | 701-873 | Sentence | denotes | These studies are needed to assess the incidence of IPA and define at-risk populations, thus offering a strategy for diagnosis, prophylaxis, and timely clinical management. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T37 | 35-38 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T38 | 64-73 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T39 | 183-186 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T40 | 632-635 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
| T41 | 639-667 | Phenotype | denotes | severe SARS-CoV-2 infections | http://purl.obolibrary.org/obo/HP_0033141 |
| T42 | 753-756 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T170 | 90-98 | SP_7 | denotes | COVID-19 |
| T171 | 337-341 | UBERON:0002048 | denotes | lung |
| T172 | 373-379 | NCBITaxon:4751 | denotes | fungus |
| T173 | 447-457 | GO:0016265 | denotes | postmortem |
| T174 | 458-470 | GO:0065007 | denotes | surveillance |
| T175 | 516-524 | SP_7 | denotes | COVID-19 |
| T176 | 646-656 | SP_7 | denotes | SARS-CoV-2 |
| T94369 | 90-98 | SP_7 | denotes | COVID-19 |
| T82530 | 337-341 | UBERON:0002048 | denotes | lung |
| T25732 | 373-379 | NCBITaxon:4751 | denotes | fungus |
| T91787 | 447-457 | GO:0016265 | denotes | postmortem |
| T81843 | 458-470 | GO:0065007 | denotes | surveillance |
| T28979 | 516-524 | SP_7 | denotes | COVID-19 |
| T62679 | 646-656 | SP_7 | denotes | SARS-CoV-2 |