PMC:7340597 / 801-1423 JSONTXT

{"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":2,"end":15},"obj":"https://glytoucan.org/Structures/Glycans/G93424OB"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":121,"end":126},"obj":"Body_part"},{"id":"T3","span":{"begin":334,"end":342},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma264783"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":121,"end":126},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PubTator","denotations":[{"id":"34","span":{"begin":55,"end":63},"obj":"Species"},{"id":"35","span":{"begin":137,"end":145},"obj":"Species"},{"id":"36","span":{"begin":386,"end":394},"obj":"Species"},{"id":"37","span":{"begin":2,"end":15},"obj":"Chemical"},{"id":"39","span":{"begin":76,"end":84},"obj":"Disease"},{"id":"40","span":{"begin":96,"end":119},"obj":"Disease"},{"id":"41","span":{"begin":315,"end":324},"obj":"Disease"},{"id":"42","span":{"begin":334,"end":349},"obj":"Disease"},{"id":"43","span":{"begin":351,"end":359},"obj":"Disease"},{"id":"44","span":{"begin":409,"end":418},"obj":"Disease"},{"id":"45","span":{"begin":469,"end":491},"obj":"Disease"},{"id":"55","span":{"begin":577,"end":585},"obj":"Species"},{"id":"57","span":{"begin":556,"end":570},"obj":"Disease"},{"id":"58","span":{"begin":571,"end":576},"obj":"Disease"}],"attributes":[{"id":"A34","pred":"tao:has_database_id","subj":"34","obj":"Tax:9606"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"Tax:9606"},{"id":"A36","pred":"tao:has_database_id","subj":"36","obj":"Tax:9606"},{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"MESH:C012990"},{"id":"A39","pred":"tao:has_database_id","subj":"39","obj":"MESH:C000657245"},{"id":"A40","pred":"tao:has_database_id","subj":"40","obj":"MESH:D055732"},{"id":"A41","pred":"tao:has_database_id","subj":"41","obj":"MESH:D011014"},{"id":"A42","pred":"tao:has_database_id","subj":"42","obj":"MESH:D055370"},{"id":"A43","pred":"tao:has_database_id","subj":"43","obj":"MESH:D005355"},{"id":"A44","pred":"tao:has_database_id","subj":"44","obj":"MESH:D011014"},{"id":"A45","pred":"tao:has_database_id","subj":"45","obj":"MESH:D055744"},{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:9606"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"MESH:D016638"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T8","span":{"begin":76,"end":84},"obj":"Disease"},{"id":"T9","span":{"begin":106,"end":119},"obj":"Disease"},{"id":"T10","span":{"begin":304,"end":324},"obj":"Disease"},{"id":"T12","span":{"begin":315,"end":324},"obj":"Disease"},{"id":"T13","span":{"begin":398,"end":418},"obj":"Disease"},{"id":"T15","span":{"begin":409,"end":418},"obj":"Disease"},{"id":"T16","span":{"begin":469,"end":491},"obj":"Disease"},{"id":"T17","span":{"begin":478,"end":491},"obj":"Disease"}],"attributes":[{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A11","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A14","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T9","span":{"begin":121,"end":126},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T10","span":{"begin":304,"end":314},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T11","span":{"begin":398,"end":408},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":2,"end":15},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T2","span":{"begin":315,"end":324},"obj":"Phenotype"},{"id":"T3","span":{"begin":326,"end":349},"obj":"Phenotype"},{"id":"T4","span":{"begin":409,"end":418},"obj":"Phenotype"}],"attributes":[{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0033006"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":2,"end":15},"obj":"GlycoEpitope"}],"attributes":[{"id":"A1","pred":"glyco_epitope_db_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-sentences","denotations":[{"id":"T13","span":{"begin":121,"end":229},"obj":"Sentence"},{"id":"T14","span":{"begin":230,"end":419},"obj":"Sentence"},{"id":"T15","span":{"begin":420,"end":492},"obj":"Sentence"},{"id":"T16","span":{"begin":494,"end":505},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T8","span":{"begin":2,"end":15},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T9","span":{"begin":19,"end":34},"obj":"UBERON:0002186;BV_4"},{"id":"T10","span":{"begin":35,"end":41},"obj":"BV_4"},{"id":"T11","span":{"begin":42,"end":47},"obj":"BV_4;UBERON:0006314"},{"id":"T12","span":{"begin":76,"end":84},"obj":"SP_7"},{"id":"T13","span":{"begin":96,"end":105},"obj":"UBERON:0002048"},{"id":"T14","span":{"begin":334,"end":342},"obj":"UBERON:0003215"},{"id":"T37393","span":{"begin":194,"end":208},"obj":"GO:0007596"},{"id":"T57275","span":{"begin":281,"end":287},"obj":"UBERON:0001638"},{"id":"T97784","span":{"begin":288,"end":303},"obj":"GO:0007596"},{"id":"T2103","span":{"begin":324,"end":332},"obj":"SP_7"},{"id":"T61739","span":{"begin":376,"end":385},"obj":"UBERON:0002048"},{"id":"T56562","span":{"begin":439,"end":447},"obj":"SP_7"},{"id":"T20701","span":{"begin":486,"end":495},"obj":"SP_7"},{"id":"T44207","span":{"begin":594,"end":603},"obj":"UBERON:0002048"},{"id":"T36528","span":{"begin":604,"end":610},"obj":"UBERON:0000479"}],"text":"e galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.\n\nConclusions\nIn this case series common late histopathology in critically ill COVID patients is not classic DAD but heterogeneous"}