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PMC:7340597 / 6530-21011 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T8 838-840 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T9 1711-1713 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T10 1886-1888 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T11 1943-1945 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T12 2044-2046 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T13 2126-2128 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T14 2244-2246 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T15 2347-2349 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T16 2419-2421 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T17 2660-2662 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T18 2664-2677 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T19 9493-9495 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T20 9631-9633 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T21 11534-11536 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T22 12928-12930 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T21 122-127 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T22 1203-1208 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 1415-1420 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T24 1454-1459 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T25 2541-2549 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T26 2622-2628 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T27 2741-2746 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T28 2959-2967 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T29 2980-2992 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T30 3094-3098 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T31 3275-3283 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T32 3342-3346 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 3527-3535 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T34 3536-3548 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T35 3616-3620 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T36 3769-3777 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T37 3778-3790 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T38 3791-3797 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T39 3858-3866 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T40 3935-3939 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T41 4014-4022 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T42 4035-4047 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T43 4123-4127 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T44 4200-4208 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T45 4221-4233 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T46 4260-4268 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T47 4337-4341 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T48 4461-4469 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T49 4482-4494 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T50 4526-4534 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T51 4603-4607 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T52 4712-4720 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T53 5147-5152 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T54 5224-5229 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T55 5288-5293 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T56 5353-5358 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T57 5485-5489 Body_part denotes dens http://purl.org/sig/ont/fma/fma24043
T58 5554-5559 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T59 6247-6252 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T60 6655-6660 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T61 6764-6768 Body_part denotes dens http://purl.org/sig/ont/fma/fma24043
T62 6937-6941 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T63 6951-6956 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T64 7021-7052 Body_part denotes right posterior cerebral artery http://purl.org/sig/ont/fma/fma50584
T65 7176-7180 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T66 7181-7187 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T67 7251-7263 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T68 7315-7326 Body_part denotes histiocytes http://purl.org/sig/ont/fma/fma83585
T69 7361-7365 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T70 7366-7372 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T71 7458-7466 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T72 7519-7532 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T73 7519-7524 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T74 7540-7548 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T75 7882-7886 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T76 7914-7922 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T77 7923-7935 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T78 8012-8020 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T79 8109-8120 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T80 8125-8136 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T81 8198-8206 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T82 8371-8382 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T83 8459-8464 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T84 8748-8753 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T85 8853-8876 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T86 9204-9209 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T87 9266-9276 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T88 9791-9795 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T89 9905-9918 Body_part denotes frontal lobes http://purl.org/sig/ont/fma/fma61824
T90 10003-10007 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T91 10156-10160 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T92 10161-10167 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T93 10222-10226 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T94 10241-10249 Body_part denotes Alveolar http://purl.org/sig/ont/fma/fma264783
T95 10362-10373 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T96 10375-10395 Body_part denotes bronchial epithelium http://purl.org/sig/ont/fma/fma67782
T97 10385-10395 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T98 10401-10414 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T99 10401-10406 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T100 10559-10567 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T101 10679-10684 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T102 11058-11063 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T103 11324-11328 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T104 11742-11746 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T105 11972-11976 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T106 11977-11983 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T107 12102-12113 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T108 12118-12129 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T109 12157-12165 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T110 12166-12178 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T111 12295-12303 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T112 12517-12525 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T113 13047-13052 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T114 13407-13411 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T115 13713-13717 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T116 13780-13788 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T117 13804-13816 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T118 13817-13823 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T119 14161-14169 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T120 14206-14219 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T121 14206-14211 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T122 14289-14300 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T15 1203-1208 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 1415-1420 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 2622-2628 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T18 2741-2746 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T19 3039-3046 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T20 3791-3797 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T21 3837-3844 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T22 5147-5152 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 5224-5229 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 5288-5293 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T25 5353-5358 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 6247-6252 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T27 6655-6660 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T28 6937-6941 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T29 6951-6956 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T30 7027-7052 Body_part denotes posterior cerebral artery http://purl.obolibrary.org/obo/UBERON_0001636
T31 7037-7052 Body_part denotes cerebral artery http://purl.obolibrary.org/obo/UBERON_0004449
T32 7046-7052 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T33 7176-7180 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T34 7181-7187 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T35 7361-7365 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 7366-7372 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T37 7477-7484 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T38 7519-7532 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T39 7519-7524 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 7525-7532 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T41 7618-7624 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T42 7882-7886 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T43 8257-8264 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T44 8325-8331 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T45 8748-8753 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T46 9204-9209 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T47 9266-9276 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T48 9272-9276 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T49 9791-9795 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T50 9905-9918 Body_part denotes frontal lobes http://purl.obolibrary.org/obo/UBERON_0016525
T51 10003-10007 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T52 10156-10160 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T53 10161-10167 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T54 10222-10226 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T55 10375-10395 Body_part denotes bronchial epithelium http://purl.obolibrary.org/obo/UBERON_0002031
T56 10385-10395 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T57 10401-10414 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T58 10401-10406 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T59 10407-10414 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T60 10679-10684 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T61 11058-11063 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T62 11324-11328 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T63 11742-11746 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T64 11972-11976 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T65 11977-11983 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T66 12295-12308 Body_part denotes alveolar wall http://purl.obolibrary.org/obo/UBERON_0004894
T67 13047-13052 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T68 13407-13411 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T69 13713-13717 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T70 13817-13823 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T71 13929-13936 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T72 14206-14219 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T73 14206-14211 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T74 14212-14219 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
219 1965-1986 Species denotes Aspergillus fumigatus Tax:746128
220 2147-2168 Species denotes Aspergillus fumigatus Tax:746128
221 2169-2189 Species denotes Enterococcus faecium Tax:1352
222 2266-2286 Species denotes Enterococcus faecium Tax:1352
223 2441-2462 Species denotes Enterococcus faecalis Tax:1351
224 1711-1713 Chemical denotes GM MESH:C012990
225 1762-1773 Chemical denotes Chloroquine MESH:D002738
226 1774-1786 Chemical denotes Prednisolone MESH:D011239
227 1829-1841 Chemical denotes prednisolone MESH:D011239
228 2126-2128 Chemical denotes GM MESH:C012990
229 2244-2246 Chemical denotes GM MESH:C012990
230 1672-1676 Disease denotes ARDS MESH:D012128
231 2323-2325 Disease denotes DM MESH:D009223
233 1522-1529 Species denotes Patient Tax:9606
244 2609-2612 Gene denotes CKI Gene:1119
245 2660-2662 Chemical denotes GM MESH:C012990
246 2487-2527 Disease denotes ARDS acute respiratory distress syndrome MESH:D012128
247 2564-2572 Disease denotes COVID-19 MESH:C000657245
248 2584-2607 Disease denotes pulmonary aspergillosis MESH:D055732
249 2614-2635 Disease denotes chronic kidney injury MESH:D051436
250 2637-2639 Disease denotes DM MESH:D009223
251 2641-2658 Disease denotes diabetes mellitus MESH:D003920
252 2683-2695 Disease denotes hypertension MESH:D006973
253 2700-2718 Disease denotes pulmonary embolism MESH:D011655
263 3048-3059 Disease denotes hyperplasia MESH:D006965
264 3220-3254 Disease denotes subsegmental PE Extensive fibrosis MESH:D005355
265 3296-3307 Disease denotes hyperplasia MESH:D006965
266 3389-3397 Disease denotes Fibrosis MESH:D005355
267 3570-3581 Disease denotes hyperplasia MESH:D006965
268 3889-3900 Disease denotes hyperplasia MESH:D006965
269 4077-4088 Disease denotes hyperplasia MESH:D006965
270 4291-4302 Disease denotes hyperplasia MESH:D006965
271 4557-4568 Disease denotes hyperplasia MESH:D006965
276 4689-4698 Disease denotes pneumonia MESH:D011014
277 4712-4727 Disease denotes alveolar damage MESH:D055370
278 4772-4781 Disease denotes pneumonia MESH:D011014
279 4786-4804 Disease denotes pulmonary embolism MESH:D011655
304 66-74 Species denotes patients Tax:9606
305 129-137 Species denotes Patients Tax:9606
306 195-203 Species denotes patients Tax:9606
307 227-235 Species denotes patients Tax:9606
308 286-293 Species denotes patient Tax:9606
309 546-554 Species denotes Patients Tax:9606
310 630-638 Species denotes patients Tax:9606
311 757-765 Species denotes patients Tax:9606
312 971-979 Species denotes patients Tax:9606
313 1148-1156 Species denotes patients Tax:9606
314 1482-1490 Species denotes patients Tax:9606
315 864-872 Species denotes patients Tax:9606
316 386-398 Chemical denotes prednisolone MESH:D011239
317 910-922 Chemical denotes voriconazole MESH:D065819
318 927-940 Chemical denotes anidulafungin MESH:D000077612
319 1011-1023 Chemical denotes prednisolone MESH:D011239
320 1121-1128 Chemical denotes steroid MESH:D013256
321 1361-1368 Chemical denotes steroid MESH:D013256
322 263-280 Disease denotes pulmonary disease MESH:D008171
323 667-685 Disease denotes pulmonary embolism MESH:D011655
324 1190-1199 Disease denotes pneumonia MESH:D011014
325 1239-1247 Disease denotes fibrosis MESH:D005355
326 1249-1270 Disease denotes Nosocomial infections MESH:D003428
327 1291-1314 Disease denotes pulmonary aspergillosis MESH:D055732
330 5261-5268 Species denotes patient Tax:9606
331 5485-5489 Chemical denotes dens MESH:D004052
334 4906-4914 Species denotes patients Tax:9606
335 5186-5194 Species denotes patients Tax:9606
337 6070-6079 Disease denotes pneumonia MESH:D011014
351 6475-6482 Species denotes patient Tax:9606
352 6889-6896 Species denotes Patient Tax:9606
353 7058-7065 Species denotes patient Tax:9606
354 6764-6768 Chemical denotes dens MESH:D004052
355 6209-6217 Disease denotes weakness MESH:D018908
356 6219-6224 Disease denotes fever MESH:D005334
357 6229-6237 Disease denotes dyspnoea MESH:D004417
358 6543-6562 Disease denotes acute renal failure MESH:D058186
359 6683-6699 Disease denotes pulmonary emboli MESH:D011655
360 6832-6852 Disease denotes nosocomial infection MESH:D003428
361 6951-6965 Disease denotes brain ischemia MESH:D002545
362 6973-6983 Disease denotes infarction MESH:D007238
363 7066-7070 Disease denotes died MESH:D003643
369 7971-7980 Disease denotes pneumonia MESH:D011014
370 8049-8057 Disease denotes fibrosis MESH:D005355
371 8198-8213 Disease denotes alveolar damage MESH:D055370
372 8390-8405 Disease denotes viral infection MESH:D001102
373 8425-8436 Disease denotes hyperplasia MESH:D006965
375 7730-7739 Species denotes SARS-CoV2 Tax:2697049
377 8535-8543 Disease denotes Fibrosis MESH:D005355
394 9678-9699 Species denotes Aspergillus fumigatus Tax:746128
395 10079-10086 Species denotes patient Tax:9606
396 10505-10512 Species denotes patient Tax:9606
397 9130-9142 Chemical denotes prednisolone MESH:D011239
398 9493-9495 Chemical denotes GM MESH:C012990
399 9712-9724 Chemical denotes prednisolone MESH:D011239
400 8700-8709 Disease denotes diarrhoea MESH:D003967
401 8714-8733 Disease denotes shortness of breath MESH:D004417
402 9106-9110 Disease denotes ARDS MESH:D012128
403 9242-9258 Disease denotes pulmonary emboli MESH:D011655
404 9545-9554 Disease denotes infection MESH:D007239
405 9843-9852 Disease denotes epileptic MESH:D004827
406 9885-9896 Disease denotes haemorrhage MESH:D006470
407 9966-9986 Disease denotes cerebral haemorrhage MESH:D002543
408 10307-10315 Disease denotes fibrosis MESH:D005355
409 10516-10534 Disease denotes pulmonary fibrosis MESH:D011658
411 10559-10574 Disease denotes alveolar damage MESH:D055370
423 11705-11712 Species denotes patient Tax:9606
424 11879-11886 Species denotes patient Tax:9606
425 11445-11457 Chemical denotes prednisolone MESH:D011239
426 11487-11499 Chemical denotes prednisolone MESH:D011239
427 10668-10677 Disease denotes hypoxemia MESH:D000860
428 10740-10756 Disease denotes pulmonary emboli MESH:D011655
429 11110-11126 Disease denotes pulmonary emboli MESH:D011655
430 11324-11335 Disease denotes lung injury MESH:D055370
431 11412-11420 Disease denotes fibrosis MESH:D005355
432 11754-11762 Disease denotes ischemia MESH:D007511
433 11783-11794 Disease denotes haemorrhage MESH:D006470
435 12517-12532 Disease denotes alveolar damage MESH:D055370
437 12580-12589 Disease denotes pneumonia MESH:D011014
450 12734-12741 Species denotes Patient Tax:9606
451 12944-12965 Species denotes Aspergillus fumigatus Tax:746128
452 13334-13341 Species denotes patient Tax:9606
453 13622-13629 Species denotes patient Tax:9606
454 12970-12982 Species denotes Enterococcus Tax:1351
455 12928-12930 Chemical denotes GM MESH:C012990
456 12636-12659 Disease denotes cardiopulmonary disease MESH:D006323
457 12714-12719 Disease denotes fever MESH:D005334
458 12724-12732 Disease denotes dyspnoea MESH:D004417
459 12875-12884 Disease denotes infection MESH:D007239
460 13085-13101 Disease denotes pulmonary emboli MESH:D011655
461 13429-13458 Disease denotes bilateral cerebellar ischemia MESH:D007511
466 13713-13724 Disease denotes lung injury MESH:D055370
467 13863-13872 Disease denotes pneumonia MESH:D011014
468 14031-14040 Disease denotes pneumonia MESH:D011014
469 14455-14464 Disease denotes pneumonia MESH:D011014

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T72 263-280 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T73 667-685 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T74 723-727 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T75 801-805 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T76 1046-1050 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T77 1179-1199 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T79 1190-1199 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T80 1249-1270 Disease denotes Nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T81 1301-1314 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T82 1672-1676 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T83 1757-1761 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T84 2323-2325 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T86 2487-2491 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T87 2492-2527 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T88 2498-2527 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T89 2558-2562 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T90 2564-2572 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 2594-2607 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T92 2629-2635 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T93 2637-2639 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T95 2641-2658 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T96 2683-2695 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T97 2700-2718 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T98 3048-3059 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T99 3141-3143 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T100 3190-3204 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T101 3296-3307 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T102 3436-3450 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T103 3570-3581 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T104 3717-3731 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T105 3889-3900 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T106 4077-4088 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T107 4170-4172 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T108 4291-4302 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T109 4384-4386 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T110 4423-4437 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T111 4557-4568 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T112 4650-4652 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T113 4678-4698 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T115 4689-4698 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T116 4758-4760 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T117 4761-4781 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T119 4772-4781 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T120 4786-4804 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T121 5604-5618 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T122 5759-5773 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T123 6028-6042 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T124 6059-6079 Disease denotes Organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T126 6070-6079 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T127 6543-6562 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T128 6549-6562 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T129 6832-6852 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T130 6843-6852 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T131 6951-6965 Disease denotes brain ischemia http://purl.obolibrary.org/obo/MONDO_0005299
T132 6957-6965 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T133 7591-7599 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T134 7730-7734 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T135 7740-7749 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T136 7779-7782 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T137 7841-7861 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T139 7852-7861 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T140 7960-7980 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T142 7971-7980 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T143 8306-8314 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T144 8390-8405 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T145 8396-8405 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T146 8425-8436 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T147 8700-8709 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T148 8964-8978 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T149 9106-9110 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T150 9436-9450 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T151 9538-9554 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T152 9545-9554 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T153 10439-10442 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T154 10516-10534 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T155 11329-11335 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T156 11754-11762 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T157 12407-12410 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T158 12569-12589 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T160 12580-12589 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T161 12636-12659 Disease denotes cardiopulmonary disease http://purl.obolibrary.org/obo/MONDO_0004596
T162 12875-12884 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T163 13302-13316 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T164 13450-13458 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T165 13718-13724 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T166 13852-13872 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T168 13863-13872 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T169 14020-14040 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T171 14031-14040 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T172 14326-14329 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T173 14444-14464 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T175 14455-14464 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 122-127 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T40 209-213 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T41 209-213 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T42 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 368-369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 537-539 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T45 588-590 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T46 827-828 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 1161-1162 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 1179-1189 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T49 1203-1208 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 1415-1420 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T51 1454-1459 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T52 1647-1653 http://purl.obolibrary.org/obo/CLO_0001929 denotes Berlin
T53 2214-2216 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T54 2222-2224 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T55 2313-2318 http://purl.obolibrary.org/obo/CLO_0007487 denotes M, 83
T56 2319-2321 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T57 2365-2367 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T58 2398-2400 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T59 2401-2403 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T60 2622-2628 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T61 2622-2628 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T62 2622-2628 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T63 2679-2681 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T64 2741-2746 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T65 2980-2992 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T66 3039-3046 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T67 3094-3098 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T68 3342-3346 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T69 3501-3510 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T70 3536-3548 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T71 3616-3620 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T72 3778-3790 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T73 3804-3805 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 3935-3939 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T75 4035-4047 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T76 4123-4127 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T77 4221-4233 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T78 4337-4341 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T79 4482-4494 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T80 4503-4505 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T81 4603-4607 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T82 4678-4688 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T83 4761-4771 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T84 5147-5152 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T85 5224-5229 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T86 5275-5276 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T87 5288-5293 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T88 5326-5327 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T89 5353-5358 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 5539-5541 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T91 5554-5559 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T92 6059-6069 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organizing
T93 6080-6081 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T94 6094-6098 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T95 6094-6098 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T96 6247-6252 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T97 6655-6660 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T98 6830-6831 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T99 6937-6941 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T100 6937-6941 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T101 6951-6956 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T102 6951-6956 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T103 7027-7036 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T104 7046-7052 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T105 7046-7052 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T106 7176-7180 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T107 7176-7180 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T108 7214-7215 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 7251-7263 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T110 7315-7326 http://purl.obolibrary.org/obo/CL_0000235 denotes histiocytes
T111 7333-7335 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T112 7361-7365 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T113 7361-7365 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T114 7435-7444 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T115 7519-7532 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T116 7519-7532 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T117 7580-7590 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T118 7603-7604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 7618-7624 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T120 7690-7700 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T121 7728-7729 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 7841-7851 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T123 7882-7886 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T124 7882-7886 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T125 7897-7898 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 7923-7935 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T127 7960-7970 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T128 7993-7994 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T129 8155-8164 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T130 8218-8223 http://purl.obolibrary.org/obo/CLO_0002850 denotes E, 20
T131 8325-8331 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T132 8459-8464 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T133 8544-8545 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T134 8558-8564 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T135 8623-8624 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 8748-8753 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T137 9018-9020 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T138 9204-9209 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T139 9266-9276 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T140 9353-9354 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T141 9629-9630 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 9791-9795 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T143 9791-9795 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T144 10003-10007 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T145 10003-10007 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T146 10096-10098 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T147 10156-10160 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T148 10156-10160 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T149 10222-10226 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T150 10222-10226 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T151 10385-10395 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T152 10401-10414 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T153 10401-10414 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T154 10575-10576 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T155 10589-10595 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T156 10679-10684 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T157 11058-11063 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T158 11324-11328 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T159 11324-11328 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T160 11523-11524 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 11742-11746 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T162 11742-11746 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T163 11972-11976 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T164 11972-11976 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T165 12140-12141 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T166 12166-12178 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T167 12275-12284 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T168 12569-12579 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T169 12590-12591 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 12604-12608 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T171 12604-12608 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T172 12688-12689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 12917-12918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 13047-13052 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T175 13407-13411 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T176 13407-13411 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T177 13700-13701 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 13713-13717 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T179 13713-13717 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T180 13804-13816 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T181 13852-13862 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T182 13883-13884 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 14020-14030 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T184 14073-14074 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 14206-14219 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T186 14206-14219 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T187 14265-14274 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T188 14444-14454 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T19 209-213 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T20 386-398 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T21 838-840 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T23 844-847 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T24 886-896 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T25 910-922 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T26 927-940 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T27 988-1003 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T28 1011-1023 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T29 1065-1079 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T30 1121-1128 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T31 1350-1353 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T32 1361-1368 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T33 1698-1700 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T36 1701-1704 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T37 1711-1713 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T39 1762-1773 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T40 1829-1841 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T41 1886-1888 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T43 1943-1945 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T45 2044-2046 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T47 2126-2128 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T49 2244-2246 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T51 2323-2325 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T52 2347-2349 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T54 2419-2421 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T56 2529-2532 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T57 2637-2639 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T58 2660-2662 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T60 2664-2677 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T61 2697-2699 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T64 2950-2952 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T67 3233-3235 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T70 3465-3467 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T73 3760-3762 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T76 4452-4454 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T79 4783-4785 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T82 6094-6098 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T83 6178-6180 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T84 7779-7782 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T85 9130-9142 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T86 9464-9467 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T87 9493-9495 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T89 9584-9598 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T90 9607-9610 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T91 9631-9633 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T93 9712-9724 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T94 9756-9766 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T95 10439-10442 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T96 10929-10932 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T97 11445-11457 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T98 11487-11499 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T99 11534-11536 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T101 11564-11567 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T102 12407-12410 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T103 12604-12608 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T104 12682-12684 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T105 12886-12889 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T106 12928-12930 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T108 13383-13391 Chemical denotes sedative http://purl.obolibrary.org/obo/CHEBI_35717
T109 14326-14329 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 667-685 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T14 1190-1199 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 2498-2518 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T16 2641-2658 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T17 2683-2695 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T18 2700-2718 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T19 3190-3204 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T20 3436-3450 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T21 3717-3731 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T22 4423-4437 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T23 4689-4698 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T24 4704-4727 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T25 4772-4781 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T26 4786-4804 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T27 5604-5618 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T28 5750-5773 Phenotype denotes traction bronchiectasis http://purl.obolibrary.org/obo/HP_0032969
T29 6028-6042 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T30 6070-6079 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T31 6201-6217 Phenotype denotes general weakness http://purl.obolibrary.org/obo/HP_0003324
T32 6219-6224 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T33 6229-6237 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T34 6543-6562 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T35 6951-6965 Phenotype denotes brain ischemia http://purl.obolibrary.org/obo/HP_0002637
T36 7852-7861 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T37 7971-7980 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T38 8190-8213 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T39 8700-8709 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T40 8714-8733 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T41 8964-8978 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T42 9427-9450 Phenotype denotes traction bronchiectasis http://purl.obolibrary.org/obo/HP_0032969
T43 9966-9986 Phenotype denotes cerebral haemorrhage http://purl.obolibrary.org/obo/HP_0001342
T44 10516-10534 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T45 10551-10574 Phenotype denotes Diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T46 10668-10677 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T47 12509-12532 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T48 12580-12589 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T49 12714-12719 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T50 12724-12732 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T51 13302-13316 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T52 13863-13872 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T53 14031-14040 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T54 14455-14464 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 8390-8405 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T4 9668-9674 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T6 838-840 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 1711-1713 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T8 1886-1888 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T9 1943-1945 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 2044-2046 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 2126-2128 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 2244-2246 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T13 2347-2349 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 2419-2421 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T15 2660-2662 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T16 2664-2677 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T17 9493-9495 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T18 9631-9633 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T19 11534-11536 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T20 12928-12930 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T55 0-10 Sentence denotes 3 Results
T56 12-34 Sentence denotes 3.1 Clinical features
T57 35-128 Sentence denotes During the study period, seven patients underwent postmortem needle core biopsy of the lungs.
T58 129-214 Sentence denotes Patients age ranged from 58 to 83 years (median 74 year) and five patients were male.
T59 215-281 Sentence denotes None of the patients had a history of (chronic) pulmonary disease.
T60 282-399 Sentence denotes One patient used immunosuppressive medication before hospital admission, in this case a short course of prednisolone.
T61 400-480 Sentence denotes Median time from hospital to ICU admission was 0 days (interquartile range 0–4).
T62 481-545 Sentence denotes Time from hospital admission to death ranged from 12 to 36 days.
T63 546-608 Sentence denotes Patients deceased at median of 21(range 9–36) ventilated days.
T64 609-686 Sentence denotes In five out of seven patients ICU stay was complicated by pulmonary embolism.
T65 687-854 Sentence denotes Adopting the proposed definition of CAPA by van Arkel et al. [9], six patients were classified as having probable CAPA (Table 1 ), based on a positive GM on BAL fluid.
T66 855-953 Sentence denotes In those patients, combination antifungal therapy with voriconazole and anidulafungin was started.
T67 954-1105 Sentence denotes Three out of six patients were on corticosteroids (60 mg prednisolone daily) at the time of CAPA diagnosis and corticosteroid treatment was terminated.
T68 1106-1248 Sentence denotes Indication for steroid treatment in these patients was a suspicion of an organizing pneumonia on chest CT or signs of progression to fibrosis.
T69 1249-1391 Sentence denotes Nosocomial infections including signs for pulmonary aspergillosis were excluded by bronchoscopy with BAL before steroid treatment was started.
T70 1392-1513 Sentence denotes Radiologic findings of chest CT and histologic results of the lungs biopsies of all seven patients are shown in Table 2 .
T71 1514-1566 Sentence denotes Table 1 Patient characteristics and clinical course.
T72 1567-1851 Sentence denotes Case Sex, age (years) Medical history Total hospital days Total ventilated days Berlin classification of ARDS Compliance phenotype PE BAL fluid GM and culture (days post hospital admission) CAPA Chloroquine Prednisolone use during hospital admission Duration of prednisolone treatment
T73 1852-1907 Sentence denotes 1 M, 77 None 12 10 Severe Low Yes GM negative No Yes No
T74 1908-2009 Sentence denotes 2 F, 73 None 20 16 Severe High Yes GM index 4.4 (day 19) Aspergillus fumigatus Probable No Yes 8 days
T75 2010-2089 Sentence denotes 3 F, 58 None 30 26 Severe Low Yes GM index 3.4 (day 20) Probable Yes Yes 5 days
T76 2090-2205 Sentence denotes 4 M, 68 None 21 21 Moderate Low Yes GM index 5.7 (day 1) Aspergillus fumigatus Enterococcus faecium Probable Yes No
T77 2206-2310 Sentence denotes 5 M, 78 HT, CKI 22 21 Moderate Low No GM index 4.3 (day 20) Enterococcus faecium Probable Yes Yes 2 days
T78 2311-2384 Sentence denotes 6 M, 83 HT, DM 13 9 Moderate Low No GM index 1.7 (day 11) Probable Yes No
T79 2385-2486 Sentence denotes 7 M, 74 None 36 36 Severe Low Yes GM index 4.4 (day 24) Enterococcus faecalis Probable Yes Yes 4 days
T80 2487-2719 Sentence denotes ARDS acute respiratory distress syndrome; BAL broncho-alveolar lavage; CAPA, COVID-19 associated pulmonary aspergillosis; CKI, chronic kidney injury; DM, diabetes mellitus; GM, galactomannan; HT, hypertension; PE pulmonary embolism.
T81 2720-2781 Sentence denotes Table 2 Radiological Chest CT scan and histological findings.
T82 2782-2852 Sentence denotes Case Radiological findings Histological findings description Diagnosis
T83 2853-3143 Sentence denotes 1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T84 3144-3397 Sentence denotes 2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis
T85 3398-3666 Sentence denotes 3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD
T86 3667-3986 Sentence denotes 4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP
T87 3987-4172 Sentence denotes 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T88 4173-4386 Sentence denotes 6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T89 4387-4652 Sentence denotes 7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T90 4653-4805 Sentence denotes AFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism.
T91 4806-4969 Sentence denotes To further investigate histopathologic findings we now present the detailed clinical course of four patients with four different histopathological characteristics.
T92 4970-5146 Sentence denotes Because of complexity and importance of the distinct patterns and their relation with radiologic findings and treatment, we preferred to discuss them separately in more detail.
T93 5147-5216 Sentence denotes Chest CT imaging of the four discussed patients are shown in Fig. 1 .
T94 5217-5251 Sentence denotes Fig. 1 Chest CT scans of case 1–4.
T95 5252-5390 Sentence denotes For each patient image A represents chest CT at hospital admission, image B follow up CT-scan (note: chest CT of case 4 was not repeated).
T96 5391-5538 Sentence denotes 1A: bilateral areas of GGO, patchy subpleural non-dependant consolidations 1B: progression of dens subpleural consolidations with air-bronchograms.
T97 5539-5649 Sentence denotes 2A GGO in both lungs, combined with crazy-paving pattern, subtle bronchiectasis are present in affected areas.
T98 5650-5774 Sentence denotes 2B GGO persisted, without progression to consolidations, more pronounced fibrotic reticulation with traction bronchiectasis.
T99 5775-5844 Sentence denotes 3A diffuse bilateral GGO with large gravity dependant consolidations.
T100 5845-5943 Sentence denotes 3B persistent GGO and consolidation, newly formed cyst-like lesions in middle and ventral regions.
T101 5944-6043 Sentence denotes 4A bilateral areas of GGO, patchy non-dependant peripheral consolidations with mild bronchiectasis.
T102 6045-6079 Sentence denotes 3.2 Case 1 – Organizing pneumonia
T103 6080-6238 Sentence denotes A 77-year old male without significant medical history was evaluated in our emergency department (ED) with complaints of general weakness, fever and dyspnoea.
T104 6239-6453 Sentence denotes Initial chest CT showed extensive bilateral areas of ground-glass opacity with both central and peripheral distribution, patchy subpleural non-dependant consolidations and areas with subpleural sparing (Fig. 1-1A).
T105 6454-6613 Sentence denotes Soon after admission patient was in need of mechanical ventilatory support and developed acute renal failure for which renal replacement therapy was initiated.
T106 6614-6829 Sentence denotes After six days of mechanical ventilation chest CT-angiography showed pulmonary emboli along with new areas of ground-glass opacity and progression of dens subpleural consolidations with air-bronchograms (Fig. 1-1B).
T107 6830-6888 Sentence denotes A nosocomial infection was ruled out by bronchial culture.
T108 6889-7053 Sentence denotes Patient's neurologic status deteriorated and CT head revealed brain ischemia due to infarction of the area supplied by the left and right posterior cerebral artery.
T109 7054-7095 Sentence denotes The patient died 12 days after admission.
T110 7096-7204 Sentence denotes Postmortem pathologic examination revealed that the overall architecture of the lung tissue remained intact.
T111 7205-7337 Sentence denotes However, a prominent amount of fibromyxoid or fibroblastic bodies was present in the alveoli with surrounding histiocytes (Fig. 2A .
T112 7338-7411 Sentence denotes The extent of involved lung tissue was estimated at around 25% (Table 2).
T113 7412-7496 Sentence denotes No remnants of hyaline membranes or prominent alveolar fibrinous exudate were found.
T114 7497-7635 Sentence denotes Microthrombi in small blood vessels of the alveolar septa were seen, as well as an organizing thrombus in a larger sized vessel (Fig. 2E).
T115 7636-7750 Sentence denotes The histologic findings in this case point towards an epithelial, and vascular phenotype of a SARS-CoV2 infection.
T116 7751-7791 Sentence denotes No fungi were present in de PAS-D stain.
T117 7792-7862 Sentence denotes This histologic pattern is characteristic for an organizing pneumonia.
T118 7863-7896 Sentence denotes Fig. 2 Microscopic lung findings.
T119 7897-8519 Sentence denotes A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H&E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H&E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H&E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H&E; 10×) E: thrombus in larger vessel (H&E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H&E, 40×).
T120 8521-8543 Sentence denotes 3.3 Case 2 – Fibrosis
T121 8544-8641 Sentence denotes A 73-year old female was transferred to our ICU due to shortage of ICU beds in a nearby hospital.
T122 8642-8734 Sentence denotes Prior to ICU admission, she was healthy but complained of diarrhoea and shortness of breath.
T123 8735-8891 Sentence denotes Non-contrast chest CT at initial hospital admission showed multiple bilateral areas of ground-glass opacity along the bronchovascular bundles and periphery.
T124 8892-8956 Sentence denotes There were some small areas of consolidation in the upper lobes.
T125 8957-9022 Sentence denotes Subtle bronchiectasis were present in affected areas (Fig. 1-2A).
T126 9023-9111 Sentence denotes Her respiratory condition required mechanical ventilation in prone position due to ARDS.
T127 9112-9196 Sentence denotes After seven days, prednisolone treatment was started because of lack of improvement.
T128 9197-9277 Sentence denotes Repeat chest CT-angiography showed segmental pulmonary emboli in the right lung.
T129 9278-9352 Sentence denotes Ground-glass opacities persisted while the consolidations had disappeared.
T130 9353-9463 Sentence denotes A reticular pattern combined with GGO was more pronounced with increasing traction bronchiectasis (Fig. 1-2B).
T131 9464-9555 Sentence denotes BAL was performed twice, but GM and culture showed no signs of additional fungal infection.
T132 9556-9644 Sentence denotes After one week of high dose glucocorticoid therapy BAL was repeated with a GM index 4.4.
T133 9645-9700 Sentence denotes Fungal cultures showed growth of Aspergillus fumigatus.
T134 9701-9787 Sentence denotes Therefore, prednisolone treatment was discontinued and antifungal treatment initiated.
T135 9788-9919 Sentence denotes CT head was performed because of the development of an epileptic insult and showed small foci of haemorrhage in both frontal lobes.
T136 9920-10037 Sentence denotes Neurologic condition worsened and progressive cerebral haemorrhage on follow up CT head was seen with poor prognosis.
T137 10038-10128 Sentence denotes Palliative treatment was started and the patient deceased 27 days after onset of symptoms.
T138 10129-10240 Sentence denotes Microscopic examination of lung tissue of this case showed an almost complete loss of normal lung architecture.
T139 10241-10326 Sentence denotes Alveolar structures were unrecognizable and replaced by extensive fibrosis (Fig. 2B).
T140 10327-10431 Sentence denotes What remained were several foci of pneumocytes, bronchial epithelium, and blood vessels without thrombi.
T141 10432-10474 Sentence denotes In the PAS-D stain no fungi were observed.
T142 10475-10535 Sentence denotes The prominent pattern in this patient is pulmonary fibrosis.
T143 10537-10574 Sentence denotes 3.4 Case 3 – Diffuse alveolar damage
T144 10575-10678 Sentence denotes A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia.
T145 10679-10886 Sentence denotes Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A).
T146 10887-11057 Sentence denotes On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters.
T147 11058-11180 Sentence denotes Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation.
T148 11181-11348 Sentence denotes Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B).
T149 11349-11470 Sentence denotes Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started.
T150 11471-11574 Sentence denotes After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid.
T151 11575-11615 Sentence denotes Fungal culture remained negative though.
T152 11616-11672 Sentence denotes Her respiratory status stabilised but remained critical.
T153 11673-11795 Sentence denotes After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage.
T154 11796-11931 Sentence denotes In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support.
T155 11932-12031 Sentence denotes In the core needle biopsy specimens the lung tissue largely preserved its preexisting architecture.
T156 12032-12184 Sentence denotes Histologic findings included an inflammatory infiltrate consisting of neutrophils and lymphocytes, and only a sporadic intra-alveolar fibroblastic plug.
T157 12185-12319 Sentence denotes The striking, distinctive feature of this case was the presence of thin, delicate hyaline membranes along the alveolar wall (Fig. 2C).
T158 12320-12368 Sentence denotes Again, micro thrombi were observed in this case.
T159 12369-12419 Sentence denotes No fungi could be demonstrated in the PAS-D stain.
T160 12420-12533 Sentence denotes Together with the clinical characteristics, these histologic findings were suggestive of diffuse alveolar damage.
T161 12535-12589 Sentence denotes 3.5 Case 4 – Acute fibrinous and organizing pneumonia
T162 12590-12733 Sentence denotes A 68-year old male without medical history of cardiopulmonary disease, was presented at the ED in a critical condition with fever and dyspnoea.
T163 12734-12853 Sentence denotes Patient was in need of endotracheal intubation and mechanical ventilation in prone position to improve his oxygenation.
T164 12854-12991 Sentence denotes To exclude secondary infection, BAL was performed and revealed a positive GM and cultured Aspergillus fumigatus and Enterococcus faecium.
T165 12992-13046 Sentence denotes Antifungal therapy was added to his treatment regimen.
T166 13047-13241 Sentence denotes Chest CT-angiography showed segmental pulmonary emboli along with extensive bilateral areas of ground-glass opacity with reticulation and multiple patchy non-dependant peripheral consolidations.
T167 13242-13329 Sentence denotes In contrast to normal areas, the abnormal areas showed mild bronchiectasis (Fig. 1-4A).
T168 13330-13403 Sentence denotes The patient remained unresponsive after cessation of sedative medication.
T169 13404-13494 Sentence denotes CT head showed extensive bilateral cerebellar ischemia with small haemorrhagic components.
T170 13495-13617 Sentence denotes After three weeks of mechanical ventilation his respiratory status worsened and treatment was ended due to poor prognosis.
T171 13618-13675 Sentence denotes The patient passed away 21 days after hospital admission.
T172 13676-13773 Sentence denotes Biopsy specimens showed a pattern of lung injury, that was partially identical to that of case 1.
T173 13774-13873 Sentence denotes Intra-alveolar depositions of fibroblastic tissue were found, consistent with organizing pneumonia.
T174 13874-14041 Sentence denotes However, a predominant, diffuse component of fibrinous exudate in the alveoli was present, which was not the case in the aforementioned case with organizing pneumonia.
T175 14042-14176 Sentence denotes Other histologic findings were a chronic inflammatory infiltrate, and mild interstitial changes, including widening of alveolar septa.
T176 14177-14239 Sentence denotes Microthrombi in small septal blood vessels were also observed.
T177 14240-14314 Sentence denotes Neither remnants hyaline membranes nor prominent eosinophils were present.
T178 14315-14361 Sentence denotes Additional PAS-D stain did not show any fungi.
T179 14362-14481 Sentence denotes The overall histologic pattern of this case was classified as acute fibrinous and organizing pneumonia (AFOP), Fig. 2D.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T94 85-95 GO:0016265 denotes postmortem
T95 122-127 UBERON:0000170 denotes lungs
T96 263-272 UBERON:0002048 denotes pulmonary
T97 299-316 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T98 386-398 CHEBI:8378;CHEBI:8378 denotes prednisolone
T99 513-518 GO:0016265 denotes death
T100 667-676 UBERON:0002048 denotes pulmonary
T101 910-922 CHEBI:10023;CHEBI:10023 denotes voriconazole
T102 988-1003 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T103 1011-1023 CHEBI:8378;CHEBI:8378 denotes prednisolone
T104 1065-1079 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T105 1121-1128 CHEBI:35341;CHEBI:35341 denotes steroid
T106 1203-1208 UBERON:0001443 denotes chest
T107 1291-1300 UBERON:0002048 denotes pulmonary
T108 1361-1368 CHEBI:35341;CHEBI:35341 denotes steroid
T109 1415-1420 UBERON:0001443 denotes chest
T110 1454-1459 UBERON:0000170 denotes lungs
T184 2498-2509 UBERON:0001004 denotes respiratory
T185 2529-2540 UBERON:0002299 denotes BAL broncho
T186 2541-2556 UBERON:0002299 denotes alveolar lavage
T187 2564-2572 SP_7 denotes COVID-19
T188 2584-2593 UBERON:0002048 denotes pulmonary
T189 2622-2628 UBERON:0002113 denotes kidney
T190 2700-2709 UBERON:0002048 denotes pulmonary
T191 2787-2788 UBERON:0003215 denotes R
T192 2792-2794 UBERON:0002048 denotes lo
T194 2849-2850 UBERON:0001443 denotes s
T204 2941-2942 UBERON:0002106 denotes e
T206 2954-2955 UBERON:0002113 denotes n
T208 2960-2961 UBERON:0002048 denotes l
T218 2980-2992 CL:0000057 denotes fibroblastic
T227 3022-3029 UBERON:0010210 denotes thrombi
T228 3039-3045 UBERON:0000055 denotes vessel
T230 3052-3053 SP_7 denotes r
T238 3068-3070 CL:0000775 denotes pi
T240 3075-3076 UBERON:0003215 denotes l
T248 3081-3082 NCBITaxon:10239 denotes l
T249 3084-3087 GO:0005634;CL:0000647 denotes ted
T250 3088-3098 CL:0000647 denotes giant cell
T251 3100-3112 GO:0005634 denotes intranuclear
T252 3113-3129 GO:0016234 denotes inclusion bodies
T254 3131-3132 UBERON:0002048 denotes n
T255 3132-3133 UBERON:0003215 denotes o
T257 3137-3138 CHEBI:51686;CHEBI:51686 denotes h
T260 3142-3145 CL:0000775 denotes P 2
T264 3159-3161 UBERON:0003215 denotes vi
T270 3170-3172 NCBITaxon:10239 denotes vi
T272 3173-3176 CL:0000647 denotes g c
T274 3176-3179 GO:0016234 denotes ons
T276 3195-3198 UBERON:0001443 denotes hie
T277 3222-3224 UBERON:3010752 denotes bs
T279 3242-3245 CHEBI:8378;CHEBI:8378 denotes ive
T282 3249-3250 UBERON:0002167 denotes r
T284 3285-3286 CHEBI:24261;CHEBI:24261 denotes t
T286 3305-3306 CHEBI:8378;CHEBI:8378 denotes i
T287 3311-3312 UBERON:0000033 denotes h
T289 3322-3324 UBERON:0001016 denotes ul
T290 3328-3330 UBERON:0001893 denotes cl
T291 3333-3335 UBERON:0000033 denotes ed
T292 3344-3347 UBERON:0002048 denotes ll,
T293 3348-3349 UBERON:0000479 denotes i
T294 3353-3354 UBERON:0002048 denotes n
T298 3371-3374 UBERON:0001981 denotes bod
T307 3465-3467 CHEBI:8378;CHEBI:8378 denotes PE
T308 3469-3472 CHEBI:8378;CHEBI:8378 denotes nfl
T310 3479-3480 UBERON:0001004 denotes y
T313 3494-3495 UBERON:0001004 denotes y
T318 3508-3510 CL:0000542 denotes es
T319 3527-3535 UBERON:0003215 denotes alveolar
T320 3536-3548 CL:0000057 denotes fibroblastic
T321 3549-3553 UBERON:0010148 denotes plug
T322 3982-4047 UBERON:0004894 denotes AFOP 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic
T323 4068-4075 UBERON:0010210 denotes thrombi
T324 4152-4179 NCBITaxon:4751 denotes bodies, no hyphae OP 6 GGO,
T325 4526-4534 UBERON:0003215 denotes alveolar
T326 4986-5013 UBERON:0001852 denotes exity and importance of the
T327 5135-5145 GO:0015671 denotes ore detail
T328 5373-5427 NCBITaxon:746128 denotes as not repeated). 1A: bilateral areas of GGO, patchy s
T329 5475-5536 NCBITaxon:1352 denotes ession of dens subpleural consolidations with air-bronchogram
T330 5691-5711 UBERON:0002048 denotes consolidations, more
T331 6248-6252 UBERON:0000033 denotes hest
T332 6283-6338 UBERON:0002037 denotes areas of ground-glass opacity with both central and per
T333 6670-6744 UBERON:0001004 denotes raphy showed pulmonary emboli along with new areas of ground-glass opacity
T334 7356-7365 UBERON:0002048 denotes lved lung
T335 7698-7714 UBERON:0003215 denotes al, and vascular
T336 7754-7791 CL:0000057 denotes fungi were present in de PAS-D stain.
T337 7792-7807 UBERON:0000479 denotes This histologic
T338 8268-8275 UBERON:0003215 denotes alveoli
T339 9759-9875 UBERON:0005169 denotes ifungal treatment initiated. CT head was performed because of the development of an epileptic insult and showed smal
T340 10005-10051 UBERON:0003215 denotes ad was seen with poor prognosis. Palliative tr
T341 10061-10092 UBERON:0003037 denotes s started and the patient decea
T342 10250-10353 UBERON:0003037 denotes structures were unrecognizable and replaced by extensive fibrosis (Fig. 2B). What remained were several
T343 10375-10414 UBERON:0001981 denotes bronchial epithelium, and blood vessels
T344 10733-10801 GO:0016020 denotes mental pulmonary emboli and diffuse bilateral ground-glass opacities
T345 11051-11252 CL:0000771 denotes eters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions
T346 11806-11826 NCBITaxon:4751 denotes f her pour neurologi
T112 74-85 NCBITaxon:5052 denotes underwent
T113 230-251 NCBITaxon:746128 denotes ients had a history o
T114 252-264 NCBITaxon:1350 denotes (chronic) p
T115 338-351 NCBITaxon:1350 denotes pital admissi
T116 490-503 NCBITaxon:1350 denotes hospital adm
T117 543-553 UBERON:0001004 denotes s. Patient
T118 577-584 UBERON:0002186 denotes 21(rang
T119 585-593 UBERON:0002299 denotes 9–36) v
T120 608-616 SP_7 denotes In five
T121 628-637 UBERON:0002048 denotes n patient
T122 666-672 UBERON:0002113 denotes pulmo
T123 708-721 CHEBI:27680;CHEBI:27680 denotes definition o
T124 744-753 UBERON:0002048 denotes al. [9],
T125 1001-1009 UBERON:0003215 denotes ds (60 m
T126 1022-1034 CL:0000057 denotes e daily) at
T127 1055-1062 UBERON:0010210 denotes nosis a
T128 1064-1071 UBERON:0010210 denotes cortic
T129 1081-1088 UBERON:0000055 denotes reatmen
T130 1114-1126 CL:0000647;GO:0005634 denotes on for stero
T131 1127-1137 CL:0000647 denotes d treatmen
T132 1139-1150 GO:0005634 denotes in these pa
T133 1151-1168 GO:0016234 denotes ients was a suspi
T134 1308-1316 UBERON:0003215 denotes llosis w
T135 1353-1365 CL:0000647;GO:0005634 denotes before ster
T136 1366-1376 CL:0000647 denotes id treatme
T137 1378-1389 GO:0005634 denotes was starte
T138 1390-1406 GO:0016234 denotes . Radiologic fin
T139 1526-1535 GO:0016020 denotes ent chara
T140 1552-1560 UBERON:0003215 denotes inical c
T141 1561-1573 CL:0000057 denotes urse. Case S
T142 1586-1593 UBERON:0010210 denotes s) Medi
T143 1620-1632 CL:0000647;GO:0005634 denotes days Total v
T144 1633-1643 CL:0000647 denotes ntilated d
T145 1645-1656 GO:0005634 denotes s Berlin cl
T146 1657-1673 GO:0016234 denotes ssification of A
T147 1786-1794 UBERON:0003215 denotes use dur
T148 1795-1808 CL:0000057 denotes ng hospital a
T149 1809-1815 UBERON:0000479 denotes missio
T150 1876-1884 UBERON:0003215 denotes e Low Ye
T151 1885-1890 UBERON:0003037 denotes GM n
T152 1898-1905 UBERON:0010210 denotes No Yes
T153 1931-1943 CL:0000647;GO:0005634 denotes re High Yes
T154 1944-1954 CL:0000647 denotes M index 4.
T155 1956-1967 GO:0005634 denotes (day 19) As
T156 1968-1984 GO:0016234 denotes ergillus fumigat
T157 2024-2032 UBERON:0003215 denotes 0 26 Sev
T158 2045-2057 CL:0000057 denotes M index 3.4
T159 2078-2085 UBERON:0010210 denotes Yes 5 
T160 2111-2123 GO:0005634;CL:0000647 denotes derate Low Y
T161 2124-2134 CL:0000647 denotes s GM index
T162 2136-2147 GO:0005634 denotes .7 (day 1)
T163 2148-2164 GO:0016234 denotes spergillus fumig
T164 2202-2210 UBERON:0003215 denotes No 5 M,
T165 2223-2235 CL:0000057 denotes 2 21 Moderat
T166 2262-2270 UBERON:0003215 denotes 20) Ente
T167 2271-2276 UBERON:0003037 denotes ococc
T168 2284-2291 UBERON:0010210 denotes um Prob
T169 2317-2329 GO:0005634;CL:0000647 denotes 3 HT, DM 13
T170 2330-2340 CL:0000647 denotes Moderate
T171 2342-2353 GO:0005634 denotes w No GM ind
T172 2354-2370 GO:0016234 denotes x 1.7 (day 11) P
T173 2453-2461 UBERON:0003215 denotes faecali
T174 2474-2486 CL:0000057 denotes s Yes 4 days
T175 2519-2527 UBERON:0003215 denotes syndrome
T176 2528-2533 UBERON:0003037 denotes BAL
T177 2541-2548 UBERON:0010210 denotes alveola
T178 2574-2586 GO:0005634;CL:0000647 denotes ssociated pu
T179 2587-2597 CL:0000647 denotes monary asp
T180 2599-2610 GO:0005634 denotes gillosis; C
T181 2611-2627 GO:0016234 denotes I, chronic kidne
T182 2699-2707 UBERON:0003215 denotes pulmona
T183 2773-2782 UBERON:0002048 denotes indings.
T5690 2857-2867 UBERON:0001004 denotes O, crazy p
T89823 2887-2898 UBERON:0002299 denotes consolidat
T6849 2899-2914 UBERON:0002299 denotes on, subpleural
T71154 2922-2930 SP_7 denotes segment
T14667 2942-2951 UBERON:0002048 denotes gmental P
T66720 2980-2986 UBERON:0002113 denotes fibrob
T11317 3058-3067 UBERON:0002048 denotes a with at
T28427 3205-3213 UBERON:0003215 denotes segment
T80397 3279-3288 UBERON:0002048 denotes olar stru
T193 3786-3791 UBERON:0001443 denotes stic
T73310 3850-3855 UBERON:0001443 denotes ning
T195 3926-3936 UBERON:0003893 denotes ed giant c
T196 3986-3990 UBERON:0004096 denotes 5 G
T197 4055-4060 UBERON:0000170 denotes (32%)
T198 4630-4635 UBERON:0001443 denotes n bod
T199 4694-4699 UBERON:0001443 denotes onia,
T200 4767-4777 UBERON:0003893 denotes zing pneum
T201 4826-4830 UBERON:0004096 denotes te h
T202 4897-4902 UBERON:0000170 denotes of f
T203 5586-5591 UBERON:0001443 denotes g pat
T15177 5708-5718 UBERON:0002106 denotes ore pronou
T205 5892-5897 UBERON:0002113 denotes ed cy
T36509 5916-5921 UBERON:0002113 denotes middl
T207 5998-6003 UBERON:0001443 denotes eral
T30186 6026-6037 UBERON:0002048 denotes d bronchiec
T209 6111-6115 UBERON:0004096 denotes ific
T210 6244-6254 UBERON:0001016 denotes al chest C
T211 6282-6286 UBERON:0000033 denotes are
T212 6296-6301 UBERON:0000955 denotes nd-gl
T213 6382-6397 UBERON:0001636 denotes dependant conso
T214 6411-6415 GO:0016265 denotes area
T215 6441-6451 GO:0016265 denotes (Fig. 1-1A
T216 6519-6523 UBERON:0002048 denotes y su
T217 6524-6530 UBERON:0000479 denotes port a
T81145 6594-6606 CL:0000057 denotes rapy was ini
T219 6633-6640 UBERON:0003215 denotes echanic
T220 6658-6669 CL:0000235 denotes st CT-angio
T221 6704-6708 UBERON:0002048 denotes g wi
T222 6709-6715 UBERON:0000479 denotes h new
T223 6801-6809 UBERON:0003215 denotes ir-bronc
T224 6862-6877 UBERON:0001981 denotes out by bronchi
T225 6885-6893 UBERON:0003215 denotes re. Pati
T226 6894-6899 UBERON:0003037 denotes nt's
T28263 6936-6944 UBERON:0010210 denotes head re
T40605 6963-6969 UBERON:0000055 denotes ia due
T229 7035-7044 UBERON:0000483 denotes r cerebra
T34853 7074-7083 SP_7 denotes days afte
T231 7098-7103 NCBITaxon:4751 denotes stmor
T232 7225-7229 UBERON:0002048 denotes amo
T233 7257-7265 UBERON:0003215 denotes lastic b
T234 7266-7278 CL:0000057 denotes dies was pre
T235 7326-7327 CHEBI:51686;CHEBI:51686 denotes
T236 7355-7363 UBERON:0003215 denotes olved lu
T237 7400-7401 CHEBI:51686;CHEBI:51686 denotes
T74625 7450-7459 CL:0000775 denotes ominent a
T239 7464-7475 CL:0000542 denotes ar fibrinou
T79223 7537-7545 UBERON:0003215 denotes he alveo
T241 7555-7556 CHEBI:51686;CHEBI:51686 denotes w
T242 7607-7614 UBERON:0003215 denotes rger si
T243 7632-7633 CHEBI:51686;CHEBI:51686 denotes E
T244 7645-7653 UBERON:0010210 denotes logic fi
T245 7664-7670 UBERON:0000055 denotes his ca
T246 7672-7673 CHEBI:51686;CHEBI:51686 denotes
T247 7711-7722 CL:0000322 denotes lar phenoty
T55890 7730-7735 NCBITaxon:10239 denotes SARS-
T46051 7778-7790 GO:0005634;CL:0000647 denotes PAS-D stain
T11789 7791-7802 CL:0000647 denotes This histo
T23332 7816-7827 GO:0005634 denotes is characte
T84342 7828-7844 GO:0016234 denotes istic for an org
T253 7846-7847 CHEBI:51686;CHEBI:51686 denotes i
T81672 7882-7886 UBERON:0002048 denotes lung
T27688 7914-7922 UBERON:0003215 denotes alveolar
T256 7923-7935 CL:0000057 denotes fibroblastic
T1033 7983-7984 CHEBI:51686;CHEBI:51686 denotes H
T258 8012-8020 UBERON:0003215 denotes alveolar
T259 8059-8060 CHEBI:51686;CHEBI:51686 denotes H
T42968 8109-8120 CL:0000775 denotes neutrophils
T261 8125-8136 CL:0000542 denotes lymphocytes
T262 8198-8206 UBERON:0003215 denotes alveolar
T263 8216-8217 CHEBI:51686;CHEBI:51686 denotes H
T70845 8268-8275 UBERON:0003215 denotes alveoli
T265 8293-8294 CHEBI:51686;CHEBI:51686 denotes H
T266 8306-8314 UBERON:0010210 denotes thrombus
T267 8325-8331 UBERON:0000055 denotes vessel
T268 8333-8334 CHEBI:51686;CHEBI:51686 denotes H
T269 8371-8382 CL:0000322 denotes pneumocytes
T29843 8390-8395 NCBITaxon:10239 denotes viral
T271 8438-8452 GO:0005634;CL:0000647 denotes multinucleated
T25696 8453-8464 CL:0000647 denotes giant cells
T273 8478-8490 GO:0005634 denotes intranuclear
T99425 8491-8507 GO:0016234 denotes inclusion bodies
T275 8509-8510 CHEBI:51686;CHEBI:51686 denotes H
T62375 8748-8753 UBERON:0001443 denotes chest
T96861 8950-8955 UBERON:3010752 denotes lobes
T278 9027-9038 UBERON:0001004 denotes respiratory
T890 9130-9142 CHEBI:8378;CHEBI:8378 denotes prednisolone
T280 9204-9209 UBERON:0001443 denotes chest
T281 9242-9251 UBERON:0002048 denotes pulmonary
T3895 9266-9276 UBERON:0002167 denotes right lung
T283 9538-9544 NCBITaxon:4751 denotes fungal
T96203 9584-9598 CHEBI:24261;CHEBI:24261 denotes glucocorticoid
T285 9678-9699 NCBITaxon:746128 denotes Aspergillus fumigatus
T42190 9712-9724 CHEBI:8378;CHEBI:8378 denotes prednisolone
T85772 9791-9795 UBERON:0000033 denotes head
T288 9905-9918 UBERON:0016525 denotes frontal lobes
T90302 9920-9930 UBERON:0001016 denotes Neurologic
T55602 9966-9974 UBERON:0001893 denotes cerebral
T84549 10003-10007 UBERON:0000033 denotes head
T87751 10156-10160 UBERON:0002048 denotes lung
T56185 10161-10167 UBERON:0000479 denotes tissue
T88680 10222-10226 UBERON:0002048 denotes lung
T295 10241-10249 UBERON:0003215 denotes Alveolar
T296 10362-10373 CL:0000322 denotes pneumocytes
T297 10375-10395 UBERON:0002031 denotes bronchial epithelium
T87358 10401-10414 UBERON:0001981 denotes blood vessels
T299 10454-10459 NCBITaxon:4751 denotes fungi
T300 10516-10525 UBERON:0002048 denotes pulmonary
T301 10559-10567 UBERON:0003215 denotes alveolar
T302 10740-10749 UBERON:0002048 denotes pulmonary
T303 10997-11006 UBERON:0002048 denotes pulmonary
T304 11110-11119 UBERON:0002048 denotes pulmonary
T305 11324-11328 UBERON:0002048 denotes lung
T306 11369-11380 UBERON:0001004 denotes respiratory
T84520 11445-11457 CHEBI:8378;CHEBI:8378 denotes prednisolone
T78423 11487-11499 CHEBI:8378;CHEBI:8378 denotes prednisolone
T309 11568-11573 UBERON:0006314 denotes fluid
T65961 11620-11631 UBERON:0001004 denotes respiratory
T311 11742-11746 UBERON:0000033 denotes head
T312 11817-11827 UBERON:0001016 denotes neurologic
T66590 11832-11843 UBERON:0001004 denotes respiratory
T314 11887-11894 GO:0016265 denotes expired
T315 11972-11976 UBERON:0002048 denotes lung
T316 11977-11983 UBERON:0000479 denotes tissue
T317 12102-12113 CL:0000775 denotes neutrophils
T40311 12118-12129 CL:0000542 denotes lymphocytes
T61749 12157-12165 UBERON:0003215 denotes alveolar
T93849 12166-12178 CL:0000057 denotes fibroblastic
T97596 12179-12183 UBERON:0010148 denotes plug
T49760 12295-12308 UBERON:0004894 denotes alveolar wall
T73271 12333-12340 UBERON:0010210 denotes thrombi
T36662 12372-12377 NCBITaxon:4751 denotes fungi
T978 12517-12525 UBERON:0003215 denotes alveolar
T31499 12757-12769 UBERON:0001852 denotes endotracheal
T16403 12841-12852 GO:0015671 denotes oxygenation
T14517 12944-12965 NCBITaxon:746128 denotes Aspergillus fumigatus
T4434 12970-12990 NCBITaxon:1352 denotes Enterococcus faecium
T32949 13085-13094 UBERON:0002048 denotes pulmonary
T23048 13407-13411 UBERON:0000033 denotes head
T39092 13439-13449 UBERON:0002037 denotes cerebellar
T74431 13543-13554 UBERON:0001004 denotes respiratory
T28835 13713-13717 UBERON:0002048 denotes lung
T46508 13780-13788 UBERON:0003215 denotes alveolar
T32950 13804-13816 CL:0000057 denotes fibroblastic
T85905 13817-13823 UBERON:0000479 denotes tissue
T72453 13944-13951 UBERON:0003215 denotes alveoli
T83892 14117-14129 UBERON:0005169 denotes interstitial
T50871 14161-14169 UBERON:0003215 denotes alveolar
T65185 14170-14175 UBERON:0003037 denotes septa
T3448 14199-14205 UBERON:0003037 denotes septal
T58151 14206-14219 UBERON:0001981 denotes blood vessels
T66331 14265-14274 GO:0016020 denotes membranes
T96825 14289-14300 CL:0000771 denotes eosinophils
T62230 14355-14360 NCBITaxon:4751 denotes fungi