PMC:7340597 / 5730-6282 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T18","span":{"begin":100,"end":105},"obj":"Body_part"},{"id":"T19","span":{"begin":134,"end":138},"obj":"Body_part"},{"id":"T20","span":{"begin":326,"end":331},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma68877"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma68877"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T14","span":{"begin":134,"end":138},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"uberon_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PubTator","denotations":[{"id":"197","span":{"begin":25,"end":33},"obj":"Species"},{"id":"198","span":{"begin":364,"end":372},"obj":"Chemical"},{"id":"199","span":{"begin":386,"end":394},"obj":"Chemical"},{"id":"200","span":{"begin":424,"end":435},"obj":"Chemical"},{"id":"201","span":{"begin":440,"end":445},"obj":"Chemical"},{"id":"202","span":{"begin":447,"end":450},"obj":"Chemical"},{"id":"203","span":{"begin":457,"end":470},"obj":"Chemical"}],"attributes":[{"id":"A197","pred":"tao:has_database_id","subj":"197","obj":"Tax:9606"},{"id":"A198","pred":"tao:has_database_id","subj":"198","obj":"MESH:D005557"},{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"MESH:D010232"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"MESH:D006416"},{"id":"A201","pred":"tao:has_database_id","subj":"201","obj":"MESH:D004801"},{"id":"A203","pred":"tao:has_database_id","subj":"203","obj":"MESH:D010504"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T71","span":{"begin":493,"end":496},"obj":"Disease"}],"attributes":[{"id":"A71","pred":"mondo_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/MONDO_0004277"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T33","span":{"begin":100,"end":105},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T34","span":{"begin":134,"end":138},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T35","span":{"begin":134,"end":138},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T36","span":{"begin":226,"end":227},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T37","span":{"begin":239,"end":240},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T38","span":{"begin":326,"end":331},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T16","span":{"begin":457,"end":470},"obj":"Chemical"},{"id":"T17","span":{"begin":466,"end":470},"obj":"Chemical"},{"id":"T18","span":{"begin":493,"end":496},"obj":"Chemical"}],"attributes":[{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_29149"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_27565"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-sentences","denotations":[{"id":"T46","span":{"begin":0,"end":133},"obj":"Sentence"},{"id":"T47","span":{"begin":134,"end":238},"obj":"Sentence"},{"id":"T48","span":{"begin":239,"end":332},"obj":"Sentence"},{"id":"T49","span":{"begin":333,"end":423},"obj":"Sentence"},{"id":"T50","span":{"begin":424,"end":552},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T84","span":{"begin":45,"end":55},"obj":"GO:0016265"},{"id":"T85","span":{"begin":100,"end":105},"obj":"UBERON:0000170"},{"id":"T86","span":{"begin":127,"end":132},"obj":"GO:0016265"},{"id":"T87","span":{"begin":134,"end":138},"obj":"UBERON:0002048"},{"id":"T88","span":{"begin":204,"end":212},"obj":"UBERON:0001062"},{"id":"T89","span":{"begin":326,"end":331},"obj":"UBERON:0000170"},{"id":"T90","span":{"begin":364,"end":372},"obj":"CHEBI:16842;CHEBI:16842"},{"id":"T91","span":{"begin":424,"end":435},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T92","span":{"begin":447,"end":448},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T93","span":{"begin":457,"end":470},"obj":"CHEBI:29149;CHEBI:29149"},{"id":"T8024","span":{"begin":50,"end":57},"obj":"CHEBI:35341;CHEBI:35341"},{"id":"T69823","span":{"begin":133,"end":138},"obj":"UBERON:0001443"},{"id":"T65939","span":{"begin":223,"end":232},"obj":"UBERON:0002048"},{"id":"T56069","span":{"begin":294,"end":303},"obj":"CHEBI:35341;CHEBI:35341"},{"id":"T93868","span":{"begin":350,"end":355},"obj":"UBERON:0001443"},{"id":"T38163","span":{"begin":389,"end":394},"obj":"UBERON:0000170"}],"text":"With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. Hematoxylin and eosin (H\u0026E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures."}