PMC:7340597 / 5730-6282
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T18 | 100-105 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T19 | 134-138 | Body_part | denotes | Lung | http://purl.org/sig/ont/fma/fma7195 |
| T20 | 326-331 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T14 | 134-138 | Body_part | denotes | Lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 197 | 25-33 | Species | denotes | patients | Tax:9606 |
| 198 | 364-372 | Chemical | denotes | formalin | MESH:D005557 |
| 199 | 386-394 | Chemical | denotes | paraffin | MESH:D010232 |
| 200 | 424-435 | Chemical | denotes | Hematoxylin | MESH:D006416 |
| 201 | 440-445 | Chemical | denotes | eosin | MESH:D004801 |
| 202 | 447-450 | Chemical | denotes | H&E | |
| 203 | 457-470 | Chemical | denotes | periodic acid | MESH:D010504 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T71 | 493-496 | Disease | denotes | PAS | http://purl.obolibrary.org/obo/MONDO_0004277 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 100-105 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T34 | 134-138 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | Lung |
| T35 | 134-138 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lung |
| T36 | 226-227 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 239-240 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T38 | 326-331 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T16 | 457-470 | Chemical | denotes | periodic acid | http://purl.obolibrary.org/obo/CHEBI_29149 |
| T17 | 466-470 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T18 | 493-496 | Chemical | denotes | PAS | http://purl.obolibrary.org/obo/CHEBI_27565 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T46 | 0-133 | Sentence | denotes | With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death. |
| T47 | 134-238 | Sentence | denotes | Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference. |
| T48 | 239-332 | Sentence | denotes | A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs. |
| T49 | 333-423 | Sentence | denotes | Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections. |
| T50 | 424-552 | Sentence | denotes | Hematoxylin and eosin (H&E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T84 | 45-55 | GO:0016265 | denotes | postmortem |
| T85 | 100-105 | UBERON:0000170 | denotes | lungs |
| T86 | 127-132 | GO:0016265 | denotes | death |
| T87 | 134-138 | UBERON:0002048 | denotes | Lung |
| T88 | 204-212 | UBERON:0001062 | denotes | anatomic |
| T89 | 326-331 | UBERON:0000170 | denotes | lungs |
| T90 | 364-372 | CHEBI:16842;CHEBI:16842 | denotes | formalin |
| T91 | 424-435 | CHEBI:51686;CHEBI:51686 | denotes | Hematoxylin |
| T92 | 447-448 | CHEBI:51686;CHEBI:51686 | denotes | H |
| T93 | 457-470 | CHEBI:29149;CHEBI:29149 | denotes | periodic acid |
| T8024 | 50-57 | CHEBI:35341;CHEBI:35341 | denotes | ortem c |
| T69823 | 133-138 | UBERON:0001443 | denotes | Lung |
| T65939 | 223-232 | UBERON:0002048 | denotes | as a refe |
| T56069 | 294-303 | CHEBI:35341;CHEBI:35341 | denotes | biopsies |
| T93868 | 350-355 | UBERON:0001443 | denotes | were |
| T38163 | 389-394 | UBERON:0000170 | denotes | affin |