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PMC:7340597 / 5730-6282 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 100-105 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T19 134-138 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T20 326-331 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 134-138 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
197 25-33 Species denotes patients Tax:9606
198 364-372 Chemical denotes formalin MESH:D005557
199 386-394 Chemical denotes paraffin MESH:D010232
200 424-435 Chemical denotes Hematoxylin MESH:D006416
201 440-445 Chemical denotes eosin MESH:D004801
202 447-450 Chemical denotes H&E
203 457-470 Chemical denotes periodic acid MESH:D010504

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 493-496 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 100-105 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T34 134-138 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T35 134-138 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T36 226-227 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 239-240 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38 326-331 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T16 457-470 Chemical denotes periodic acid http://purl.obolibrary.org/obo/CHEBI_29149
T17 466-470 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T18 493-496 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-133 Sentence denotes With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death.
T47 134-238 Sentence denotes Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference.
T48 239-332 Sentence denotes A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs.
T49 333-423 Sentence denotes Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections.
T50 424-552 Sentence denotes Hematoxylin and eosin (H&E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T84 45-55 GO:0016265 denotes postmortem
T85 100-105 UBERON:0000170 denotes lungs
T86 127-132 GO:0016265 denotes death
T87 134-138 UBERON:0002048 denotes Lung
T88 204-212 UBERON:0001062 denotes anatomic
T89 326-331 UBERON:0000170 denotes lungs
T90 364-372 CHEBI:16842;CHEBI:16842 denotes formalin
T91 424-435 CHEBI:51686;CHEBI:51686 denotes Hematoxylin
T92 447-448 CHEBI:51686;CHEBI:51686 denotes H
T93 457-470 CHEBI:29149;CHEBI:29149 denotes periodic acid
T8024 50-57 CHEBI:35341;CHEBI:35341 denotes ortem c
T69823 133-138 UBERON:0001443 denotes Lung
T65939 223-232 UBERON:0002048 denotes as a refe
T56069 294-303 CHEBI:35341;CHEBI:35341 denotes biopsies
T93868 350-355 UBERON:0001443 denotes were
T38163 389-394 UBERON:0000170 denotes affin