PMC:7340597 / 514-1293 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7340597","sourcedb":"PMC","sourceid":"7340597","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7340597","text":"Measurement and main results\nPatients age ranged from 58 to 83 years, five males and two females were included. Time from hospital admission to death ranged from 12 to 36 days, with a mean of 20 ventilated days. ICU stay was complicated by pulmonary embolism in five patients and positive galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis. Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations. We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia. None of the biopsy specimens showed any signs of invasive aspergillosis.","divisions":[{"label":"title","span":{"begin":0,"end":28}}],"tracks":[{"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":289,"end":302},"obj":"https://glytoucan.org/Structures/Glycans/G93424OB"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid_Glycan-Motif-Structure"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T2","span":{"begin":408,"end":413},"obj":"Body_part"},{"id":"T3","span":{"begin":621,"end":629},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma264783"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":408,"end":413},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"32","span":{"begin":29,"end":37},"obj":"Species"},{"id":"33","span":{"begin":267,"end":275},"obj":"Species"},{"id":"34","span":{"begin":342,"end":350},"obj":"Species"},{"id":"35","span":{"begin":424,"end":432},"obj":"Species"},{"id":"36","span":{"begin":673,"end":681},"obj":"Species"},{"id":"37","span":{"begin":289,"end":302},"obj":"Chemical"},{"id":"38","span":{"begin":240,"end":258},"obj":"Disease"},{"id":"39","span":{"begin":363,"end":371},"obj":"Disease"},{"id":"40","span":{"begin":383,"end":406},"obj":"Disease"},{"id":"41","span":{"begin":602,"end":611},"obj":"Disease"},{"id":"42","span":{"begin":621,"end":636},"obj":"Disease"},{"id":"43","span":{"begin":638,"end":646},"obj":"Disease"},{"id":"44","span":{"begin":696,"end":705},"obj":"Disease"},{"id":"45","span":{"begin":756,"end":778},"obj":"Disease"}],"attributes":[{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"Tax:9606"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"Tax:9606"},{"id":"A34","pred":"tao:has_database_id","subj":"34","obj":"Tax:9606"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"Tax:9606"},{"id":"A36","pred":"tao:has_database_id","subj":"36","obj":"Tax:9606"},{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"MESH:C012990"},{"id":"A38","pred":"tao:has_database_id","subj":"38","obj":"MESH:D011655"},{"id":"A39","pred":"tao:has_database_id","subj":"39","obj":"MESH:C000657245"},{"id":"A40","pred":"tao:has_database_id","subj":"40","obj":"MESH:D055732"},{"id":"A41","pred":"tao:has_database_id","subj":"41","obj":"MESH:D011014"},{"id":"A42","pred":"tao:has_database_id","subj":"42","obj":"MESH:D055370"},{"id":"A43","pred":"tao:has_database_id","subj":"43","obj":"MESH:D005355"},{"id":"A44","pred":"tao:has_database_id","subj":"44","obj":"MESH:D011014"},{"id":"A45","pred":"tao:has_database_id","subj":"45","obj":"MESH:D055744"},{"subj":"32","pred":"source","obj":"LitCovid-PubTator"},{"subj":"33","pred":"source","obj":"LitCovid-PubTator"},{"subj":"34","pred":"source","obj":"LitCovid-PubTator"},{"subj":"35","pred":"source","obj":"LitCovid-PubTator"},{"subj":"36","pred":"source","obj":"LitCovid-PubTator"},{"subj":"37","pred":"source","obj":"LitCovid-PubTator"},{"subj":"38","pred":"source","obj":"LitCovid-PubTator"},{"subj":"39","pred":"source","obj":"LitCovid-PubTator"},{"subj":"40","pred":"source","obj":"LitCovid-PubTator"},{"subj":"41","pred":"source","obj":"LitCovid-PubTator"},{"subj":"42","pred":"source","obj":"LitCovid-PubTator"},{"subj":"43","pred":"source","obj":"LitCovid-PubTator"},{"subj":"44","pred":"source","obj":"LitCovid-PubTator"},{"subj":"45","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T7","span":{"begin":240,"end":258},"obj":"Disease"},{"id":"T8","span":{"begin":363,"end":371},"obj":"Disease"},{"id":"T9","span":{"begin":393,"end":406},"obj":"Disease"},{"id":"T10","span":{"begin":591,"end":611},"obj":"Disease"},{"id":"T12","span":{"begin":602,"end":611},"obj":"Disease"},{"id":"T13","span":{"begin":685,"end":705},"obj":"Disease"},{"id":"T15","span":{"begin":696,"end":705},"obj":"Disease"},{"id":"T16","span":{"begin":756,"end":778},"obj":"Disease"},{"id":"T17","span":{"begin":765,"end":778},"obj":"Disease"}],"attributes":[{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005279"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A11","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A14","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T4","span":{"begin":75,"end":80},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T5","span":{"begin":75,"end":80},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T6","span":{"begin":89,"end":96},"obj":"http://purl.obolibrary.org/obo/UBERON_0003100"},{"id":"T7","span":{"begin":168,"end":170},"obj":"http://purl.obolibrary.org/obo/CLO_0001313"},{"id":"T8","span":{"begin":182,"end":183},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T9","span":{"begin":408,"end":413},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T10","span":{"begin":591,"end":601},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T11","span":{"begin":685,"end":695},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"}],"attributes":[{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":289,"end":302},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":240,"end":258},"obj":"Phenotype"},{"id":"T2","span":{"begin":602,"end":611},"obj":"Phenotype"},{"id":"T3","span":{"begin":613,"end":636},"obj":"Phenotype"},{"id":"T4","span":{"begin":696,"end":705},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002204"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0033006"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":289,"end":302},"obj":"GlycoEpitope"}],"attributes":[{"id":"A1","pred":"glyco_epitope_db_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-GlycoEpitope"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T9","span":{"begin":0,"end":28},"obj":"Sentence"},{"id":"T10","span":{"begin":29,"end":111},"obj":"Sentence"},{"id":"T11","span":{"begin":112,"end":211},"obj":"Sentence"},{"id":"T12","span":{"begin":212,"end":407},"obj":"Sentence"},{"id":"T13","span":{"begin":408,"end":516},"obj":"Sentence"},{"id":"T14","span":{"begin":517,"end":706},"obj":"Sentence"},{"id":"T15","span":{"begin":707,"end":779},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T9","pred":"source","obj":"LitCovid-sentences"},{"subj":"T10","pred":"source","obj":"LitCovid-sentences"},{"subj":"T11","pred":"source","obj":"LitCovid-sentences"},{"subj":"T12","pred":"source","obj":"LitCovid-sentences"},{"subj":"T13","pred":"source","obj":"LitCovid-sentences"},{"subj":"T14","pred":"source","obj":"LitCovid-sentences"},{"subj":"T15","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T6","span":{"begin":144,"end":149},"obj":"GO:0016265"},{"id":"T7","span":{"begin":240,"end":249},"obj":"UBERON:0002048"},{"id":"T8","span":{"begin":289,"end":302},"obj":"CHEBI:27680;CHEBI:27680"},{"id":"T9","span":{"begin":306,"end":321},"obj":"UBERON:0002186;BV_4"},{"id":"T10","span":{"begin":322,"end":328},"obj":"BV_4"},{"id":"T11","span":{"begin":329,"end":334},"obj":"BV_4;UBERON:0006314"},{"id":"T12","span":{"begin":363,"end":371},"obj":"SP_7"},{"id":"T13","span":{"begin":383,"end":392},"obj":"UBERON:0002048"},{"id":"T14","span":{"begin":621,"end":629},"obj":"UBERON:0003215"},{"id":"T47338","span":{"begin":56,"end":64},"obj":"SP_7"},{"id":"T50253","span":{"begin":160,"end":164},"obj":"UBERON:0002048"},{"id":"T37393","span":{"begin":481,"end":495},"obj":"GO:0007596"},{"id":"T57275","span":{"begin":568,"end":574},"obj":"UBERON:0001638"},{"id":"T97784","span":{"begin":575,"end":590},"obj":"GO:0007596"},{"id":"T2103","span":{"begin":611,"end":619},"obj":"SP_7"},{"id":"T61739","span":{"begin":663,"end":672},"obj":"UBERON:0002048"},{"id":"T56562","span":{"begin":726,"end":734},"obj":"SP_7"}],"attributes":[{"subj":"T6","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T7","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T8","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T9","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T10","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T11","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T12","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T13","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T14","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T47338","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T50253","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T37393","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T57275","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T97784","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T2103","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T61739","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T56562","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid_Glycan-Motif-Structure","color":"#93ec98","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93a7"},{"id":"LitCovid-PD-UBERON","color":"#93c1ec"},{"id":"LitCovid-PubTator","color":"#dbec93"},{"id":"LitCovid-PD-MONDO","color":"#e393ec"},{"id":"LitCovid-PD-CLO","color":"#93ecc9"},{"id":"LitCovid-PD-CHEBI","color":"#ecae93"},{"id":"LitCovid-PD-HP","color":"#9493ec"},{"id":"LitCovid-PD-GlycoEpitope","color":"#abec93"},{"id":"LitCovid-sentences","color":"#ec93c5"},{"id":"LitCovid-PMC-OGER-BB","color":"#93dfec"}]}]}}