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PMC:7340597 / 514-1293 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 289-302 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 408-413 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T3 621-629 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 408-413 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
32 29-37 Species denotes Patients Tax:9606
33 267-275 Species denotes patients Tax:9606
34 342-350 Species denotes patients Tax:9606
35 424-432 Species denotes patients Tax:9606
36 673-681 Species denotes patients Tax:9606
37 289-302 Chemical denotes galactomannan MESH:C012990
38 240-258 Disease denotes pulmonary embolism MESH:D011655
39 363-371 Disease denotes COVID-19 MESH:C000657245
40 383-406 Disease denotes pulmonary aspergillosis MESH:D055732
41 602-611 Disease denotes pneumonia MESH:D011014
42 621-636 Disease denotes alveolar damage MESH:D055370
43 638-646 Disease denotes fibrosis MESH:D005355
44 696-705 Disease denotes pneumonia MESH:D011014
45 756-778 Disease denotes invasive aspergillosis MESH:D055744

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 240-258 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T8 363-371 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 393-406 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T10 591-611 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T12 602-611 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 685-705 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T15 696-705 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 756-778 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T17 765-778 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T4 75-80 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T5 75-80 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T6 89-96 http://purl.obolibrary.org/obo/UBERON_0003100 denotes females
T7 168-170 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T8 182-183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 408-413 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T10 591-601 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T11 685-695 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 289-302 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 240-258 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T2 602-611 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 613-636 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T4 696-705 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 289-302 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T9 0-28 Sentence denotes Measurement and main results
T10 29-111 Sentence denotes Patients age ranged from 58 to 83 years, five males and two females were included.
T11 112-211 Sentence denotes Time from hospital admission to death ranged from 12 to 36 days, with a mean of 20 ventilated days.
T12 212-407 Sentence denotes ICU stay was complicated by pulmonary embolism in five patients and positive galactomannan on bronchoalveolar lavage fluid in six patients, suggesting COVID-19 associated pulmonary aspergillosis.
T13 408-516 Sentence denotes Chest CT in all patients showed ground glass opacities, commonly progressing to nondependent consolidations.
T14 517-706 Sentence denotes We observed four distinct histopathological patterns: acute fibrinous and organizing pneumonia, diffuse alveolar damage, fibrosis and, in four out of seven patients an organizing pneumonia.
T15 707-779 Sentence denotes None of the biopsy specimens showed any signs of invasive aspergillosis.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T6 144-149 GO:0016265 denotes death
T7 240-249 UBERON:0002048 denotes pulmonary
T8 289-302 CHEBI:27680;CHEBI:27680 denotes galactomannan
T9 306-321 UBERON:0002186;BV_4 denotes bronchoalveolar
T10 322-328 BV_4 denotes lavage
T11 329-334 BV_4;UBERON:0006314 denotes fluid
T12 363-371 SP_7 denotes COVID-19
T13 383-392 UBERON:0002048 denotes pulmonary
T14 621-629 UBERON:0003215 denotes alveolar
T47338 56-64 SP_7 denotes to 83 y
T50253 160-164 UBERON:0002048 denotes m 12
T37393 481-495 GO:0007596 denotes ing to nondepe
T57275 568-574 UBERON:0001638 denotes s: acu
T97784 575-590 GO:0007596 denotes e fibrinous and
T2103 611-619 SP_7 denotes , diffus
T61739 663-672 UBERON:0002048 denotes of seven
T56562 726-734 SP_7 denotes specimen