PMC:7340597 / 17105-18461 JSONTXT

{"project":"LitCovid_Glycan-Motif-Structure","denotations":[{"id":"T21","span":{"begin":959,"end":961},"obj":"https://glytoucan.org/Structures/Glycans/G93424OB"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T101","span":{"begin":104,"end":109},"obj":"Body_part"},{"id":"T102","span":{"begin":483,"end":488},"obj":"Body_part"},{"id":"T103","span":{"begin":749,"end":753},"obj":"Body_part"},{"id":"T104","span":{"begin":1167,"end":1171},"obj":"Body_part"}],"attributes":[{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma7154"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T60","span":{"begin":104,"end":109},"obj":"Body_part"},{"id":"T61","span":{"begin":483,"end":488},"obj":"Body_part"},{"id":"T62","span":{"begin":749,"end":753},"obj":"Body_part"},{"id":"T63","span":{"begin":1167,"end":1171},"obj":"Body_part"}],"attributes":[{"id":"A60","pred":"uberon_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A61","pred":"uberon_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A62","pred":"uberon_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A63","pred":"uberon_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/UBERON_0000033"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PubTator","denotations":[{"id":"423","span":{"begin":1130,"end":1137},"obj":"Species"},{"id":"424","span":{"begin":1304,"end":1311},"obj":"Species"},{"id":"425","span":{"begin":870,"end":882},"obj":"Chemical"},{"id":"426","span":{"begin":912,"end":924},"obj":"Chemical"},{"id":"427","span":{"begin":93,"end":102},"obj":"Disease"},{"id":"428","span":{"begin":165,"end":181},"obj":"Disease"},{"id":"429","span":{"begin":535,"end":551},"obj":"Disease"},{"id":"430","span":{"begin":749,"end":760},"obj":"Disease"},{"id":"431","span":{"begin":837,"end":845},"obj":"Disease"},{"id":"432","span":{"begin":1179,"end":1187},"obj":"Disease"},{"id":"433","span":{"begin":1208,"end":1219},"obj":"Disease"}],"attributes":[{"id":"A423","pred":"tao:has_database_id","subj":"423","obj":"Tax:9606"},{"id":"A424","pred":"tao:has_database_id","subj":"424","obj":"Tax:9606"},{"id":"A425","pred":"tao:has_database_id","subj":"425","obj":"MESH:D011239"},{"id":"A426","pred":"tao:has_database_id","subj":"426","obj":"MESH:D011239"},{"id":"A427","pred":"tao:has_database_id","subj":"427","obj":"MESH:D000860"},{"id":"A428","pred":"tao:has_database_id","subj":"428","obj":"MESH:D011655"},{"id":"A429","pred":"tao:has_database_id","subj":"429","obj":"MESH:D011655"},{"id":"A430","pred":"tao:has_database_id","subj":"430","obj":"MESH:D055370"},{"id":"A431","pred":"tao:has_database_id","subj":"431","obj":"MESH:D005355"},{"id":"A432","pred":"tao:has_database_id","subj":"432","obj":"MESH:D007511"},{"id":"A433","pred":"tao:has_database_id","subj":"433","obj":"MESH:D006470"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T155","span":{"begin":754,"end":760},"obj":"Disease"},{"id":"T156","span":{"begin":1179,"end":1187},"obj":"Disease"}],"attributes":[{"id":"A155","pred":"mondo_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/MONDO_0021178"},{"id":"A156","pred":"mondo_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/MONDO_0005053"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T154","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T155","span":{"begin":14,"end":20},"obj":"http://purl.obolibrary.org/obo/UBERON_0003100"},{"id":"T156","span":{"begin":104,"end":109},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T157","span":{"begin":483,"end":488},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T158","span":{"begin":749,"end":753},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T159","span":{"begin":749,"end":753},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T160","span":{"begin":948,"end":949},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T161","span":{"begin":1167,"end":1171},"obj":"http://purl.obolibrary.org/obo/UBERON_0000033"},{"id":"T162","span":{"begin":1167,"end":1171},"obj":"http://www.ebi.ac.uk/efo/EFO_0000964"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T96","span":{"begin":354,"end":357},"obj":"Chemical"},{"id":"T97","span":{"begin":870,"end":882},"obj":"Chemical"},{"id":"T98","span":{"begin":912,"end":924},"obj":"Chemical"},{"id":"T99","span":{"begin":959,"end":961},"obj":"Chemical"},{"id":"T101","span":{"begin":989,"end":992},"obj":"Chemical"}],"attributes":[{"id":"A96","pred":"chebi_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A97","pred":"chebi_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/CHEBI_8378"},{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_8378"},{"id":"A99","pred":"chebi_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A100","pred":"chebi_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T46","span":{"begin":93,"end":102},"obj":"Phenotype"}],"attributes":[{"id":"A46","pred":"hp_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/HP_0012418"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T19","span":{"begin":959,"end":961},"obj":"GlycoEpitope"}],"attributes":[{"id":"A19","pred":"glyco_epitope_db_id","subj":"T19","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-sentences","denotations":[{"id":"T144","span":{"begin":0,"end":103},"obj":"Sentence"},{"id":"T145","span":{"begin":104,"end":311},"obj":"Sentence"},{"id":"T146","span":{"begin":312,"end":482},"obj":"Sentence"},{"id":"T147","span":{"begin":483,"end":605},"obj":"Sentence"},{"id":"T148","span":{"begin":606,"end":773},"obj":"Sentence"},{"id":"T149","span":{"begin":774,"end":895},"obj":"Sentence"},{"id":"T150","span":{"begin":896,"end":999},"obj":"Sentence"},{"id":"T151","span":{"begin":1000,"end":1040},"obj":"Sentence"},{"id":"T152","span":{"begin":1041,"end":1097},"obj":"Sentence"},{"id":"T153","span":{"begin":1098,"end":1220},"obj":"Sentence"},{"id":"T154","span":{"begin":1221,"end":1356},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T344","span":{"begin":158,"end":226},"obj":"GO:0016020"},{"id":"T345","span":{"begin":476,"end":677},"obj":"CL:0000771"},{"id":"T346","span":{"begin":1231,"end":1251},"obj":"NCBITaxon:4751"},{"id":"T302","span":{"begin":165,"end":174},"obj":"UBERON:0002048"},{"id":"T303","span":{"begin":422,"end":431},"obj":"UBERON:0002048"},{"id":"T304","span":{"begin":535,"end":544},"obj":"UBERON:0002048"},{"id":"T305","span":{"begin":749,"end":753},"obj":"UBERON:0002048"},{"id":"T306","span":{"begin":794,"end":805},"obj":"UBERON:0001004"},{"id":"T84520","span":{"begin":870,"end":882},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T78423","span":{"begin":912,"end":924},"obj":"CHEBI:8378;CHEBI:8378"},{"id":"T309","span":{"begin":993,"end":998},"obj":"UBERON:0006314"},{"id":"T65961","span":{"begin":1045,"end":1056},"obj":"UBERON:0001004"},{"id":"T311","span":{"begin":1167,"end":1171},"obj":"UBERON:0000033"},{"id":"T312","span":{"begin":1242,"end":1252},"obj":"UBERON:0001016"},{"id":"T66590","span":{"begin":1257,"end":1268},"obj":"UBERON:0001004"},{"id":"T314","span":{"begin":1312,"end":1319},"obj":"GO:0016265"}],"text":"A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. Fungal culture remained negative though. Her respiratory status stabilised but remained critical. After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support."}