PMC:7340597 / 17105-18461
Annnotations
LitCovid_Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21 | 959-961 | https://glytoucan.org/Structures/Glycans/G93424OB | denotes | GM |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T101 | 104-109 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T102 | 483-488 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T103 | 749-753 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T104 | 1167-1171 | Body_part | denotes | head | http://purl.org/sig/ont/fma/fma7154 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T60 | 104-109 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T61 | 483-488 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T62 | 749-753 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T63 | 1167-1171 | Body_part | denotes | head | http://purl.obolibrary.org/obo/UBERON_0000033 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 423 | 1130-1137 | Species | denotes | patient | Tax:9606 |
| 424 | 1304-1311 | Species | denotes | patient | Tax:9606 |
| 425 | 870-882 | Chemical | denotes | prednisolone | MESH:D011239 |
| 426 | 912-924 | Chemical | denotes | prednisolone | MESH:D011239 |
| 427 | 93-102 | Disease | denotes | hypoxemia | MESH:D000860 |
| 428 | 165-181 | Disease | denotes | pulmonary emboli | MESH:D011655 |
| 429 | 535-551 | Disease | denotes | pulmonary emboli | MESH:D011655 |
| 430 | 749-760 | Disease | denotes | lung injury | MESH:D055370 |
| 431 | 837-845 | Disease | denotes | fibrosis | MESH:D005355 |
| 432 | 1179-1187 | Disease | denotes | ischemia | MESH:D007511 |
| 433 | 1208-1219 | Disease | denotes | haemorrhage | MESH:D006470 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T155 | 754-760 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T156 | 1179-1187 | Disease | denotes | ischemia | http://purl.obolibrary.org/obo/MONDO_0005053 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T154 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T155 | 14-20 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T156 | 104-109 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T157 | 483-488 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T158 | 749-753 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T159 | 749-753 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T160 | 948-949 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T161 | 1167-1171 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | head |
| T162 | 1167-1171 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | head |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T96 | 354-357 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T97 | 870-882 | Chemical | denotes | prednisolone | http://purl.obolibrary.org/obo/CHEBI_8378 |
| T98 | 912-924 | Chemical | denotes | prednisolone | http://purl.obolibrary.org/obo/CHEBI_8378 |
| T99 | 959-961 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T101 | 989-992 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T46 | 93-102 | Phenotype | denotes | hypoxemia | http://purl.obolibrary.org/obo/HP_0012418 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T19 | 959-961 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T144 | 0-103 | Sentence | denotes | A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia. |
| T145 | 104-311 | Sentence | denotes | Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A). |
| T146 | 312-482 | Sentence | denotes | On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters. |
| T147 | 483-605 | Sentence | denotes | Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. |
| T148 | 606-773 | Sentence | denotes | Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B). |
| T149 | 774-895 | Sentence | denotes | Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started. |
| T150 | 896-999 | Sentence | denotes | After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid. |
| T151 | 1000-1040 | Sentence | denotes | Fungal culture remained negative though. |
| T152 | 1041-1097 | Sentence | denotes | Her respiratory status stabilised but remained critical. |
| T153 | 1098-1220 | Sentence | denotes | After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage. |
| T154 | 1221-1356 | Sentence | denotes | In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T344 | 158-226 | GO:0016020 | denotes | mental pulmonary emboli and diffuse bilateral ground-glass opacities |
| T345 | 476-677 | CL:0000771 | denotes | eters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions |
| T346 | 1231-1251 | NCBITaxon:4751 | denotes | f her pour neurologi |
| T302 | 165-174 | UBERON:0002048 | denotes | pulmonary |
| T303 | 422-431 | UBERON:0002048 | denotes | pulmonary |
| T304 | 535-544 | UBERON:0002048 | denotes | pulmonary |
| T305 | 749-753 | UBERON:0002048 | denotes | lung |
| T306 | 794-805 | UBERON:0001004 | denotes | respiratory |
| T84520 | 870-882 | CHEBI:8378;CHEBI:8378 | denotes | prednisolone |
| T78423 | 912-924 | CHEBI:8378;CHEBI:8378 | denotes | prednisolone |
| T309 | 993-998 | UBERON:0006314 | denotes | fluid |
| T65961 | 1045-1056 | UBERON:0001004 | denotes | respiratory |
| T311 | 1167-1171 | UBERON:0000033 | denotes | head |
| T312 | 1242-1252 | UBERON:0001016 | denotes | neurologic |
| T66590 | 1257-1268 | UBERON:0001004 | denotes | respiratory |
| T314 | 1312-1319 | GO:0016265 | denotes | expired |