PMC:7340597 / 14400-15049 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T75","span":{"begin":12,"end":16},"obj":"Body_part"},{"id":"T76","span":{"begin":44,"end":52},"obj":"Body_part"},{"id":"T77","span":{"begin":53,"end":65},"obj":"Body_part"},{"id":"T78","span":{"begin":142,"end":150},"obj":"Body_part"},{"id":"T79","span":{"begin":239,"end":250},"obj":"Body_part"},{"id":"T80","span":{"begin":255,"end":266},"obj":"Body_part"},{"id":"T81","span":{"begin":328,"end":336},"obj":"Body_part"},{"id":"T82","span":{"begin":501,"end":512},"obj":"Body_part"},{"id":"T83","span":{"begin":589,"end":594},"obj":"Body_part"}],"attributes":[{"id":"A75","pred":"fma_id","subj":"T75","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A76","pred":"fma_id","subj":"T76","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A77","pred":"fma_id","subj":"T77","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A78","pred":"fma_id","subj":"T78","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A79","pred":"fma_id","subj":"T79","obj":"http://purl.org/sig/ont/fma/fma62860"},{"id":"A80","pred":"fma_id","subj":"T80","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A81","pred":"fma_id","subj":"T81","obj":"http://purl.org/sig/ont/fma/fma264783"},{"id":"A82","pred":"fma_id","subj":"T82","obj":"http://purl.org/sig/ont/fma/fma62499"},{"id":"A83","pred":"fma_id","subj":"T83","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T42","span":{"begin":12,"end":16},"obj":"Body_part"},{"id":"T43","span":{"begin":387,"end":394},"obj":"Body_part"},{"id":"T44","span":{"begin":455,"end":461},"obj":"Body_part"}],"attributes":[{"id":"A42","pred":"uberon_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A43","pred":"uberon_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/UBERON_0007780"},{"id":"A44","pred":"uberon_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/UBERON_0000055"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"369","span":{"begin":101,"end":110},"obj":"Disease"},{"id":"370","span":{"begin":179,"end":187},"obj":"Disease"},{"id":"371","span":{"begin":328,"end":343},"obj":"Disease"},{"id":"372","span":{"begin":520,"end":535},"obj":"Disease"},{"id":"373","span":{"begin":555,"end":566},"obj":"Disease"}],"attributes":[{"id":"A369","pred":"tao:has_database_id","subj":"369","obj":"MESH:D011014"},{"id":"A370","pred":"tao:has_database_id","subj":"370","obj":"MESH:D005355"},{"id":"A371","pred":"tao:has_database_id","subj":"371","obj":"MESH:D055370"},{"id":"A372","pred":"tao:has_database_id","subj":"372","obj":"MESH:D001102"},{"id":"A373","pred":"tao:has_database_id","subj":"373","obj":"MESH:D006965"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T140","span":{"begin":90,"end":110},"obj":"Disease"},{"id":"T142","span":{"begin":101,"end":110},"obj":"Disease"},{"id":"T143","span":{"begin":436,"end":444},"obj":"Disease"},{"id":"T144","span":{"begin":520,"end":535},"obj":"Disease"},{"id":"T145","span":{"begin":526,"end":535},"obj":"Disease"},{"id":"T146","span":{"begin":555,"end":566},"obj":"Disease"}],"attributes":[{"id":"A140","pred":"mondo_id","subj":"T140","obj":"http://purl.obolibrary.org/obo/MONDO_0015265"},{"id":"A141","pred":"mondo_id","subj":"T140","obj":"http://purl.obolibrary.org/obo/MONDO_0056821"},{"id":"A142","pred":"mondo_id","subj":"T142","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A143","pred":"mondo_id","subj":"T143","obj":"http://purl.obolibrary.org/obo/MONDO_0000831"},{"id":"A144","pred":"mondo_id","subj":"T144","obj":"http://purl.obolibrary.org/obo/MONDO_0005108"},{"id":"A145","pred":"mondo_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A146","pred":"mondo_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T123","span":{"begin":12,"end":16},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T124","span":{"begin":12,"end":16},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T125","span":{"begin":27,"end":28},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T126","span":{"begin":53,"end":65},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T127","span":{"begin":90,"end":100},"obj":"http://purl.obolibrary.org/obo/OBI_0000245"},{"id":"T128","span":{"begin":123,"end":124},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T129","span":{"begin":285,"end":294},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T130","span":{"begin":348,"end":353},"obj":"http://purl.obolibrary.org/obo/CLO_0002850"},{"id":"T131","span":{"begin":455,"end":461},"obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"T132","span":{"begin":589,"end":594},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T37","span":{"begin":101,"end":110},"obj":"Phenotype"},{"id":"T38","span":{"begin":320,"end":343},"obj":"Phenotype"}],"attributes":[{"id":"A37","pred":"hp_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A38","pred":"hp_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/HP_0033006"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T3","span":{"begin":520,"end":535},"obj":"http://purl.obolibrary.org/obo/GO_0016032"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T119","span":{"begin":27,"end":649},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T338","span":{"begin":398,"end":405},"obj":"UBERON:0003215"},{"id":"T81672","span":{"begin":12,"end":16},"obj":"UBERON:0002048"},{"id":"T27688","span":{"begin":44,"end":52},"obj":"UBERON:0003215"},{"id":"T256","span":{"begin":53,"end":65},"obj":"CL:0000057"},{"id":"T1033","span":{"begin":113,"end":114},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T258","span":{"begin":142,"end":150},"obj":"UBERON:0003215"},{"id":"T259","span":{"begin":189,"end":190},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T42968","span":{"begin":239,"end":250},"obj":"CL:0000775"},{"id":"T261","span":{"begin":255,"end":266},"obj":"CL:0000542"},{"id":"T262","span":{"begin":328,"end":336},"obj":"UBERON:0003215"},{"id":"T263","span":{"begin":346,"end":347},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T70845","span":{"begin":398,"end":405},"obj":"UBERON:0003215"},{"id":"T265","span":{"begin":423,"end":424},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T266","span":{"begin":436,"end":444},"obj":"UBERON:0010210"},{"id":"T267","span":{"begin":455,"end":461},"obj":"UBERON:0000055"},{"id":"T268","span":{"begin":463,"end":464},"obj":"CHEBI:51686;CHEBI:51686"},{"id":"T269","span":{"begin":501,"end":512},"obj":"CL:0000322"},{"id":"T29843","span":{"begin":520,"end":525},"obj":"NCBITaxon:10239"},{"id":"T271","span":{"begin":568,"end":582},"obj":"GO:0005634;CL:0000647"},{"id":"T25696","span":{"begin":583,"end":594},"obj":"CL:0000647"},{"id":"T273","span":{"begin":608,"end":620},"obj":"GO:0005634"},{"id":"T99425","span":{"begin":621,"end":637},"obj":"GO:0016234"},{"id":"T275","span":{"begin":639,"end":640},"obj":"CHEBI:51686;CHEBI:51686"}],"text":"Microscopic lung findings. A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H\u0026E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H\u0026E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H\u0026E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H\u0026E; 10×) E: thrombus in larger vessel (H\u0026E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H\u0026E, 40×)."}