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PMC:7340597 / 14400-15049 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T75 12-16 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T76 44-52 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T77 53-65 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T78 142-150 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T79 239-250 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T80 255-266 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T81 328-336 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T82 501-512 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T83 589-594 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T42 12-16 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T43 387-394 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T44 455-461 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
369 101-110 Disease denotes pneumonia MESH:D011014
370 179-187 Disease denotes fibrosis MESH:D005355
371 328-343 Disease denotes alveolar damage MESH:D055370
372 520-535 Disease denotes viral infection MESH:D001102
373 555-566 Disease denotes hyperplasia MESH:D006965

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T140 90-110 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T142 101-110 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T143 436-444 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T144 520-535 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T145 526-535 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T146 555-566 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T123 12-16 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T124 12-16 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T125 27-28 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 53-65 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T127 90-100 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T128 123-124 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T129 285-294 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T130 348-353 http://purl.obolibrary.org/obo/CLO_0002850 denotes E, 20
T131 455-461 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T132 589-594 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T37 101-110 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T38 320-343 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 520-535 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T119 27-649 Sentence denotes A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H&E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H&E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H&E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H&E; 10×) E: thrombus in larger vessel (H&E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H&E, 40×).

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T338 398-405 UBERON:0003215 denotes alveoli
T81672 12-16 UBERON:0002048 denotes lung
T27688 44-52 UBERON:0003215 denotes alveolar
T256 53-65 CL:0000057 denotes fibroblastic
T1033 113-114 CHEBI:51686;CHEBI:51686 denotes H
T258 142-150 UBERON:0003215 denotes alveolar
T259 189-190 CHEBI:51686;CHEBI:51686 denotes H
T42968 239-250 CL:0000775 denotes neutrophils
T261 255-266 CL:0000542 denotes lymphocytes
T262 328-336 UBERON:0003215 denotes alveolar
T263 346-347 CHEBI:51686;CHEBI:51686 denotes H
T70845 398-405 UBERON:0003215 denotes alveoli
T265 423-424 CHEBI:51686;CHEBI:51686 denotes H
T266 436-444 UBERON:0010210 denotes thrombus
T267 455-461 UBERON:0000055 denotes vessel
T268 463-464 CHEBI:51686;CHEBI:51686 denotes H
T269 501-512 CL:0000322 denotes pneumocytes
T29843 520-525 NCBITaxon:10239 denotes viral
T271 568-582 GO:0005634;CL:0000647 denotes multinucleated
T25696 583-594 CL:0000647 denotes giant cells
T273 608-620 GO:0005634 denotes intranuclear
T99425 621-637 GO:0016234 denotes inclusion bodies
T275 639-640 CHEBI:51686;CHEBI:51686 denotes H