PMC:7335631 / 4533-4936 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T55","span":{"begin":49,"end":56},"obj":"Body_part"},{"id":"T56","span":{"begin":85,"end":92},"obj":"Body_part"},{"id":"T57","span":{"begin":116,"end":126},"obj":"Body_part"},{"id":"T58","span":{"begin":149,"end":156},"obj":"Body_part"}],"attributes":[{"id":"A55","pred":"fma_id","subj":"T55","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A56","pred":"fma_id","subj":"T56","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A57","pred":"fma_id","subj":"T57","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A58","pred":"fma_id","subj":"T58","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T30","span":{"begin":75,"end":79},"obj":"Disease"},{"id":"T31","span":{"begin":160,"end":164},"obj":"Disease"}],"attributes":[{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T23","span":{"begin":25,"end":30},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T51","span":{"begin":49,"end":56},"obj":"Chemical"},{"id":"T52","span":{"begin":116,"end":126},"obj":"Chemical"},{"id":"T53","span":{"begin":116,"end":121},"obj":"Chemical"},{"id":"T54","span":{"begin":122,"end":126},"obj":"Chemical"},{"id":"T55","span":{"begin":149,"end":156},"obj":"Chemical"}],"attributes":[{"id":"A51","pred":"chebi_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A52","pred":"chebi_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A53","pred":"chebi_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A54","pred":"chebi_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A55","pred":"chebi_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"LitCovid-sentences","denotations":[{"id":"T35","span":{"begin":0,"end":10},"obj":"Sentence"},{"id":"T36","span":{"begin":11,"end":106},"obj":"Sentence"},{"id":"T37","span":{"begin":107,"end":236},"obj":"Sentence"},{"id":"T38","span":{"begin":237,"end":403},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"2_test","denotations":[{"id":"32640274-30976793-44882428","span":{"begin":399,"end":401},"obj":"30976793"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T112","span":{"begin":25,"end":30},"obj":"NCBITaxon:10239"},{"id":"T113","span":{"begin":75,"end":84},"obj":"SP_7"},{"id":"T114","span":{"begin":85,"end":92},"obj":"SO:0001026"},{"id":"T115","span":{"begin":140,"end":148},"obj":"GO:0031975"},{"id":"T116","span":{"begin":160,"end":169},"obj":"SP_7"},{"id":"T30","span":{"begin":140,"end":148},"obj":"GO:0031975"},{"id":"T31","span":{"begin":160,"end":169},"obj":"SP_7"},{"id":"T41379","span":{"begin":78,"end":86},"obj":"GO:0031975"},{"id":"T85801","span":{"begin":175,"end":183},"obj":"GO:0031975"},{"id":"T15896","span":{"begin":199,"end":204},"obj":"NCBITaxon:10239"},{"id":"T29585","span":{"begin":237,"end":240},"obj":"CHEBI:24870;CHEBI:24870"},{"id":"T42657","span":{"begin":265,"end":273},"obj":"GO:0031975"}],"text":"2 Methods\nFrom the NCBI virus database, all the protein sequences of 3617 SARS-CoV2 genomes were fetched. Then the amino acid sequences of envelope protein of SARS-CoV2 are exported in fasta format using file operations through Matlab. These sequences (fasta formatted) are blasted using Clustal-Omega and found the mismatched and from their mutations and their associated positions were detected [13]."}