PMC:7335631 / 3408-4134
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T39 | 70-77 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T40 | 237-245 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T41 | 339-346 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T42 | 417-424 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T43 | 425-432 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T44 | 487-497 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T45 | 498-500 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T46 | 507-517 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T47 | 518-520 | Body_part | denotes | A2 | http://purl.org/sig/ont/fma/fma66595 |
| T48 | 583-593 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T49 | 691-698 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T19 | 81-85 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T20 | 113-117 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T21 | 253-257 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T22 | 267-271 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T23 | 350-354 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T24 | 364-368 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T25 | 436-440 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 702-706 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 124-125 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T19 | 167-173 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
| T20 | 175-179 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T21 | 518-520 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | A2 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T33 | 70-77 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T34 | 237-245 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T35 | 339-346 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T36 | 417-424 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T37 | 425-432 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T38 | 487-497 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T39 | 487-492 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T40 | 493-497 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T41 | 507-517 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T42 | 507-512 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T43 | 513-517 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T44 | 583-593 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T45 | 583-588 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T46 | 589-593 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T47 | 691-698 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29 | 0-206 | Sentence | denotes | Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. |
| T30 | 207-297 | Sentence | denotes | The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 . |
| T31 | 298-374 | Sentence | denotes | Fig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2. |
| T32 | 375-726 | Sentence | denotes | Mutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T78 | 61-69 | GO:0031975 | denotes | envelope |
| T79 | 81-90 | SP_7 | denotes | SARS-CoV2 |
| T80 | 113-122 | SP_10 | denotes | SARS-CoV1 |
| T81 | 126-133 | NCBITaxon:species | denotes | species |
| T82 | 137-148 | NCBITaxon:11118 | denotes | coronavirus |
| T83 | 167-173 | NCBITaxon:9606 | denotes | humans |
| T84 | 175-179 | SP_2;NCBITaxon:6960 | denotes | bats |
| T85 | 198-205 | NCBITaxon:40674 | denotes | mammals |
| T86 | 228-236 | GO:0031975 | denotes | envelope |
| T87 | 253-262 | SP_10 | denotes | SARS-CoV1 |
| T88 | 267-276 | SP_7 | denotes | SARS-CoV2 |
| T89 | 330-338 | GO:0031975 | denotes | envelope |
| T90 | 350-359 | SP_10 | denotes | SARS-CoV1 |
| T91 | 364-373 | SP_7 | denotes | SARS-CoV2 |
| T92 | 401-407 | SO:0000417 | denotes | domain |
| T93 | 415-424 | PG_2 | denotes | E protein |
| T94 | 436-445 | SP_7 | denotes | SARS-CoV2 |
| T95 | 682-690 | GO:0031975 | denotes | envelope |
| T96 | 702-711 | SP_10 | denotes | SARS-CoV1 |
| T34504 | 36-45 | SP_7 | denotes | n have be |
| T97111 | 46-53 | SO:0001026 | denotes | n found |
| T76196 | 113-120 | SO:0001026 | denotes | SARS-Co |
| T44455 | 254-262 | GO:0031975 | denotes | ARS-CoV1 |
| T1151 | 275-284 | SP_7 | denotes | 2 is give |
| T75613 | 285-292 | SO:0001026 | denotes | in Fig |
| T76504 | 583-592 | SP_7 | denotes | amino aci |
| T40061 | 593-600 | SO:0001026 | denotes | sequen |
| T30316 | 606-615 | PG_2 | denotes | e deletio |
| T756 | 700-706 | SO:0000417 | denotes | f SARS |