PMC:7335631 / 3408-4134 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T39","span":{"begin":70,"end":77},"obj":"Body_part"},{"id":"T40","span":{"begin":237,"end":245},"obj":"Body_part"},{"id":"T41","span":{"begin":339,"end":346},"obj":"Body_part"},{"id":"T42","span":{"begin":417,"end":424},"obj":"Body_part"},{"id":"T43","span":{"begin":425,"end":432},"obj":"Body_part"},{"id":"T44","span":{"begin":487,"end":497},"obj":"Body_part"},{"id":"T45","span":{"begin":498,"end":500},"obj":"Body_part"},{"id":"T46","span":{"begin":507,"end":517},"obj":"Body_part"},{"id":"T47","span":{"begin":518,"end":520},"obj":"Body_part"},{"id":"T48","span":{"begin":583,"end":593},"obj":"Body_part"},{"id":"T49","span":{"begin":691,"end":698},"obj":"Body_part"}],"attributes":[{"id":"A39","pred":"fma_id","subj":"T39","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A42","pred":"fma_id","subj":"T42","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A43","pred":"fma_id","subj":"T43","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A44","pred":"fma_id","subj":"T44","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A45","pred":"fma_id","subj":"T45","obj":"http://purl.org/sig/ont/fma/fma66592"},{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma66595"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T19","span":{"begin":81,"end":85},"obj":"Disease"},{"id":"T20","span":{"begin":113,"end":117},"obj":"Disease"},{"id":"T21","span":{"begin":253,"end":257},"obj":"Disease"},{"id":"T22","span":{"begin":267,"end":271},"obj":"Disease"},{"id":"T23","span":{"begin":350,"end":354},"obj":"Disease"},{"id":"T24","span":{"begin":364,"end":368},"obj":"Disease"},{"id":"T25","span":{"begin":436,"end":440},"obj":"Disease"},{"id":"T26","span":{"begin":702,"end":706},"obj":"Disease"}],"attributes":[{"id":"A19","pred":"mondo_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A20","pred":"mondo_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A21","pred":"mondo_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A22","pred":"mondo_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T18","span":{"begin":124,"end":125},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T19","span":{"begin":167,"end":173},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T20","span":{"begin":175,"end":179},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T21","span":{"begin":518,"end":520},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T33","span":{"begin":70,"end":77},"obj":"Chemical"},{"id":"T34","span":{"begin":237,"end":245},"obj":"Chemical"},{"id":"T35","span":{"begin":339,"end":346},"obj":"Chemical"},{"id":"T36","span":{"begin":417,"end":424},"obj":"Chemical"},{"id":"T37","span":{"begin":425,"end":432},"obj":"Chemical"},{"id":"T38","span":{"begin":487,"end":497},"obj":"Chemical"},{"id":"T39","span":{"begin":487,"end":492},"obj":"Chemical"},{"id":"T40","span":{"begin":493,"end":497},"obj":"Chemical"},{"id":"T41","span":{"begin":507,"end":517},"obj":"Chemical"},{"id":"T42","span":{"begin":507,"end":512},"obj":"Chemical"},{"id":"T43","span":{"begin":513,"end":517},"obj":"Chemical"},{"id":"T44","span":{"begin":583,"end":593},"obj":"Chemical"},{"id":"T45","span":{"begin":583,"end":588},"obj":"Chemical"},{"id":"T46","span":{"begin":589,"end":593},"obj":"Chemical"},{"id":"T47","span":{"begin":691,"end":698},"obj":"Chemical"}],"attributes":[{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A34","pred":"chebi_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A35","pred":"chebi_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A36","pred":"chebi_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A37","pred":"chebi_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A38","pred":"chebi_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A39","pred":"chebi_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A43","pred":"chebi_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A44","pred":"chebi_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A45","pred":"chebi_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A46","pred":"chebi_id","subj":"T46","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A47","pred":"chebi_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}

{"project":"LitCovid-sentences","denotations":[{"id":"T29","span":{"begin":0,"end":206},"obj":"Sentence"},{"id":"T30","span":{"begin":207,"end":297},"obj":"Sentence"},{"id":"T31","span":{"begin":298,"end":374},"obj":"Sentence"},{"id":"T32","span":{"begin":375,"end":726},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T78","span":{"begin":61,"end":69},"obj":"GO:0031975"},{"id":"T79","span":{"begin":81,"end":90},"obj":"SP_7"},{"id":"T80","span":{"begin":113,"end":122},"obj":"SP_10"},{"id":"T81","span":{"begin":126,"end":133},"obj":"NCBITaxon:species"},{"id":"T82","span":{"begin":137,"end":148},"obj":"NCBITaxon:11118"},{"id":"T83","span":{"begin":167,"end":173},"obj":"NCBITaxon:9606"},{"id":"T84","span":{"begin":175,"end":179},"obj":"SP_2;NCBITaxon:6960"},{"id":"T85","span":{"begin":198,"end":205},"obj":"NCBITaxon:40674"},{"id":"T86","span":{"begin":228,"end":236},"obj":"GO:0031975"},{"id":"T87","span":{"begin":253,"end":262},"obj":"SP_10"},{"id":"T88","span":{"begin":267,"end":276},"obj":"SP_7"},{"id":"T89","span":{"begin":330,"end":338},"obj":"GO:0031975"},{"id":"T90","span":{"begin":350,"end":359},"obj":"SP_10"},{"id":"T91","span":{"begin":364,"end":373},"obj":"SP_7"},{"id":"T92","span":{"begin":401,"end":407},"obj":"SO:0000417"},{"id":"T93","span":{"begin":415,"end":424},"obj":"PG_2"},{"id":"T94","span":{"begin":436,"end":445},"obj":"SP_7"},{"id":"T95","span":{"begin":682,"end":690},"obj":"GO:0031975"},{"id":"T96","span":{"begin":702,"end":711},"obj":"SP_10"},{"id":"T34504","span":{"begin":36,"end":45},"obj":"SP_7"},{"id":"T97111","span":{"begin":46,"end":53},"obj":"SO:0001026"},{"id":"T76196","span":{"begin":113,"end":120},"obj":"SO:0001026"},{"id":"T44455","span":{"begin":254,"end":262},"obj":"GO:0031975"},{"id":"T1151","span":{"begin":275,"end":284},"obj":"SP_7"},{"id":"T75613","span":{"begin":285,"end":292},"obj":"SO:0001026"},{"id":"T76504","span":{"begin":583,"end":592},"obj":"SP_7"},{"id":"T40061","span":{"begin":593,"end":600},"obj":"SO:0001026"},{"id":"T30316","span":{"begin":606,"end":615},"obj":"PG_2"},{"id":"T756","span":{"begin":700,"end":706},"obj":"SO:0000417"}],"text":"Four mutations including one deletion have been found in the envelope protein of SARS-CoV2 with reference to the SARS-CoV1, a species of coronavirus that also infects humans, bats and certain other mammals. The alignment of the envelope proteins of the SARS-CoV1 and SARS-CoV2 is given in Fig. 2 .\nFig. 2 Clustal alignment of the envelope protein of SARS-CoV1 and SARS-CoV2.\nMutations in (C)-terminus domain in the E protein protein of SARS-CoV2 are T55S, V56F, E69R (the mutation of an amino acid A1 to an amino acid A2 is denoted by A1pA2 where p denotes location in the reference amino acid sequence).The deletion mutation of G at the 70th position with respect to the reference envelope protein of SARS-CoV1 is also noted."}