PMC:7326463 / 5031-5893
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T6 | 589-594 | Body_part | denotes | Serum | http://purl.org/sig/ont/fma/fma63083 |
| T7 | 633-638 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T8 | 777-782 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 589-594 | Body_part | denotes | Serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T6 | 633-638 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T7 | 777-782 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T42 | 0-22 | Disease | denotes | Invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T43 | 9-22 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T44 | 67-76 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T45 | 77-86 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T46 | 126-134 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T47 | 139-147 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T48 | 150-160 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T49 | 171-181 | Disease | denotes | fusariosis | http://purl.obolibrary.org/obo/MONDO_0016426 |
| T50 | 222-235 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T51 | 255-265 | Disease | denotes | fusariosis | http://purl.obolibrary.org/obo/MONDO_0016426 |
| T52 | 381-391 | Disease | denotes | fusariosis | http://purl.obolibrary.org/obo/MONDO_0016426 |
| T53 | 396-409 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T54 | 455-465 | Disease | denotes | fusariosis | http://purl.obolibrary.org/obo/MONDO_0016426 |
| T55 | 534-556 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T56 | 543-556 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T57 | 720-742 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T58 | 729-742 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 26-27 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T46 | 91-94 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T47 | 362-363 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T48 | 435-436 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T49 | 622-629 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T50 | 665-666 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T51 | 777-782 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T52 | 777-782 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T53 | 783-788 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T36 | 597-603 | Chemical | denotes | glucan | http://purl.obolibrary.org/obo/CHEBI_37163 |
| T37 | 608-621 | Chemical | denotes | galactomannan | http://purl.obolibrary.org/obo/CHEBI_27680 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T4 | 608-621 | GlycoEpitope | denotes | galactomannan | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T13 | 77-86 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 182 | 112-120 | Species | denotes | patients | Tax:9606 |
| 183 | 126-134 | Species | denotes | SARS-CoV | Tax:694009 |
| 184 | 300-308 | Species | denotes | patients | Tax:9606 |
| 185 | 762-770 | Species | denotes | patients | Tax:9606 |
| 186 | 575-583 | Species | denotes | patients | Tax:9606 |
| 187 | 595-603 | Chemical | denotes | β-glucan | MESH:D047071 |
| 188 | 608-621 | Chemical | denotes | galactomannan | MESH:C012990 |
| 189 | 0-22 | Disease | denotes | Invasive aspergillosis | MESH:D055744 |
| 190 | 77-86 | Disease | denotes | pneumonia | MESH:D011014 |
| 191 | 139-160 | Disease | denotes | SARS-CoV-2 infections | MESH:C000657245 |
| 192 | 222-235 | Disease | denotes | aspergillosis | MESH:D001228 |
| 193 | 285-299 | Disease | denotes | critically ill | MESH:D016638 |
| 194 | 321-337 | Disease | denotes | pulmonary damage | MESH:D008171 |
| 195 | 396-409 | Disease | denotes | aspergillosis | MESH:D001228 |
| 196 | 446-465 | Disease | denotes | invasive fusariosis | MESH:D060585 |
| 197 | 534-556 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 198 | 560-574 | Disease | denotes | critically ill | MESH:D016638 |
| 199 | 720-742 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T42 | 0-167 | Sentence | denotes | Invasive aspergillosis is a well-recognized complication of severe influenza pneumonia and has been reported in patients with SARS-CoV and SARS-CoV-2 infections [1,2]. |
| T43 | 168-350 | Sentence | denotes | As fusariosis shares many common characteristics with aspergillosis [6], occurrence of fusariosis in immunocompetent critically ill patients with severe pulmonary damage is possible. |
| T44 | 351-588 | Sentence | denotes | If we draw a parallel between fusariosis and aspergillosis, the case we describe is a putative invasive fusariosis according to the classification by Blot et al. for the diagnosis of invasive aspergillosis in critically ill patients [7]. |
| T45 | 589-653 | Sentence | denotes | Serum β-glucan and galactomannan testing in serum were negative. |
| T46 | 654-862 | Sentence | denotes | Here again a resemblance can be seen with what is observed during invasive aspergillosis in immunocompetent patients where blood tests are often negative while respiratory samples establish the diagnosis [7]. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T72 | 126-134 | SP_10 | denotes | SARS-CoV |
| T73 | 139-149 | SP_7 | denotes | SARS-CoV-2 |
| T74 | 321-330 | UBERON:0002048 | denotes | pulmonary |
| T75 | 589-594 | UBERON:0001977 | denotes | Serum |
| T76 | 597-603 | CHEBI:37163;CHEBI:37163 | denotes | glucan |
| T77 | 608-621 | CHEBI:27680;CHEBI:27680 | denotes | galactomannan |
| T78 | 633-638 | UBERON:0001977 | denotes | serum |
| T79 | 777-782 | UBERON:0000178 | denotes | blood |
| T80 | 814-825 | UBERON:0001004 | denotes | respiratory |
| T37554 | 126-134 | SP_10 | denotes | SARS-CoV |
| T55412 | 139-149 | SP_7 | denotes | SARS-CoV-2 |
| T31163 | 321-330 | UBERON:0002048 | denotes | pulmonary |
| T43968 | 589-594 | UBERON:0001977 | denotes | Serum |
| T95642 | 597-603 | CHEBI:37163;CHEBI:37163 | denotes | glucan |
| T55093 | 608-621 | CHEBI:27680;CHEBI:27680 | denotes | galactomannan |
| T54683 | 633-638 | UBERON:0001977 | denotes | serum |
| T14799 | 777-782 | UBERON:0000178 | denotes | blood |
| T78928 | 814-825 | UBERON:0001004 | denotes | respiratory |