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PMC:7324763 / 6604-8150 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T144 5-13 SP_10 denotes SARS-CoV
T145 20-28 SP_9 denotes MERS-CoV
T146 30-40 SP_7 denotes SARS-CoV-2
T147 74-78 SP_2;NCBITaxon:9397 denotes bats
T148 230-236 GO:0016265 denotes deaths
T149 428-437 UBERON:0002048 denotes pneumonia
T150 577-585 SP_7 denotes COVID-19
T151 606-620 UBERON:0004535 denotes cardiovascular
T152 635-645 SP_7 denotes SARS-CoV-2
T153 693-698 UBERON:0000170 denotes lungs
T154 708-715 UBERON:0006562 denotes pharynx
T155 717-722 UBERON:0000948 denotes heart
T156 724-729 UBERON:0002107 denotes liver
T157 731-736 UBERON:0000955 denotes brain
T158 742-749 UBERON:0002113 denotes kidneys
T159 772-782 SP_7 denotes SARS-CoV-2
T160 847-858 UBERON:0001004 denotes respiratory
T161 1000-1010 SP_7 denotes SARS-CoV-2
T162 1011-1016 NCBITaxon:10239 denotes viral
T163 1070-1079 PG_1 denotes S protein
T164 1087-1091 G_3;PG_10;PR:000003622 denotes ACE2
T165 1266-1278 GO:0065007 denotes dysregulated
T166 1279-1285 UBERON:0002405;GO:0006955 denotes immune
T167 1286-1294 GO:0006955 denotes response
T168 1512-1523 NCBITaxon:11118 denotes coronavirus
T27837 5-13 SP_10 denotes SARS-CoV
T66351 20-28 SP_9 denotes MERS-CoV
T25865 30-40 SP_7 denotes SARS-CoV-2
T70409 74-78 SP_2;NCBITaxon:9397 denotes bats
T30050 230-236 GO:0016265 denotes deaths
T62691 428-437 UBERON:0002048 denotes pneumonia
T16346 577-585 SP_7 denotes COVID-19
T76543 606-620 UBERON:0004535 denotes cardiovascular
T94510 635-645 SP_7 denotes SARS-CoV-2
T94074 693-698 UBERON:0000170 denotes lungs
T37630 708-715 UBERON:0006562 denotes pharynx
T61277 717-722 UBERON:0000948 denotes heart
T78288 724-729 UBERON:0002107 denotes liver
T41351 731-736 UBERON:0000955 denotes brain
T59513 742-749 UBERON:0002113 denotes kidneys
T38781 772-782 SP_7 denotes SARS-CoV-2
T17456 847-858 UBERON:0001004 denotes respiratory
T73966 1000-1010 SP_7 denotes SARS-CoV-2
T63749 1011-1016 NCBITaxon:10239 denotes viral
T56086 1070-1079 PG_1 denotes S protein
T38154 1087-1091 G_3;PG_10;PR:000003622 denotes ACE2
T32855 1266-1278 GO:0065007 denotes dysregulated
T84416 1279-1285 UBERON:0002405;GO:0006955 denotes immune
T42050 1286-1294 GO:0006955 denotes response
T7827 1512-1523 NCBITaxon:11118 denotes coronavirus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T56 693-698 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T57 708-715 Body_part denotes pharynx http://purl.org/sig/ont/fma/fma46688
T58 717-722 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T59 724-729 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T60 731-736 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T61 742-749 Body_part denotes kidneys http://purl.org/sig/ont/fma/fma7203
T62 1072-1079 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T10 708-715 Body_part denotes pharynx http://purl.obolibrary.org/obo/UBERON_0006562
T11 717-722 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T12 724-729 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T13 731-736 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T62 5-13 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 5-9 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 30-38 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 30-34 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T66 167-177 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T67 304-314 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T68 348-351 Disease denotes flu http://purl.obolibrary.org/obo/MONDO_0005812
T69 428-437 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T70 442-446 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T71 577-585 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T72 606-628 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T73 635-643 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 635-639 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T75 772-780 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 772-776 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T77 1000-1008 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 1000-1004 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T79 1321-1333 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T80 1524-1534 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T88 74-78 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T89 269-271 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T90 646-649 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T91 693-698 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T92 708-715 http://purl.obolibrary.org/obo/UBERON_0001042 denotes pharynx
T93 708-715 http://purl.obolibrary.org/obo/UBERON_0006562 denotes pharynx
T94 717-722 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T95 717-722 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T96 717-722 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T97 717-722 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T98 724-729 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T99 724-729 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T100 731-736 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T101 731-736 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T102 742-749 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidneys
T103 742-749 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidneys
T104 742-749 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidneys
T105 751-753 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T106 942-945 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T107 1106-1108 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T108 1205-1206 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 1264-1265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 895-903 Chemical denotes carriers http://purl.obolibrary.org/obo/CHEBI_78059
T12 1072-1079 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
230 1087-1091 Gene denotes ACE2 Gene:59272
231 5-13 Species denotes SARS-CoV Tax:694009
232 20-28 Species denotes MERS-CoV Tax:1335626
233 30-40 Species denotes SARS-CoV-2 Tax:2697049
234 315-319 Species denotes CoVs Tax:11118
235 326-334 Species denotes patients Tax:9606
236 486-494 Species denotes patients Tax:9606
237 635-645 Species denotes SARS-CoV-2 Tax:2697049
238 772-782 Species denotes SARS-CoV-2 Tax:2697049
239 1000-1010 Species denotes SARS-CoV-2 Tax:2697049
240 1221-1224 Species denotes CoV Tax:11118
241 1425-1428 Species denotes CoV Tax:11118
242 847-858 Species denotes respiratory Tax:12814
243 167-177 Disease denotes infections MESH:D007239
244 230-236 Disease denotes deaths MESH:D003643
245 376-381 Disease denotes fever MESH:D005334
246 383-388 Disease denotes cough MESH:D003371
247 394-402 Disease denotes lethargy MESH:D053609
248 428-437 Disease denotes pneumonia MESH:D011014
249 442-446 Disease denotes ARDS MESH:D012128
250 563-571 Disease denotes infected MESH:D007239
251 577-585 Disease denotes COVID-19 MESH:C000657245
252 606-628 Disease denotes cardiovascular disease MESH:D002318
253 886-894 Disease denotes infected MESH:D007239
254 1321-1333 Disease denotes inflammation MESH:D007249
255 1512-1534 Disease denotes coronavirus infections MESH:D018352

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T14 376-381 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 383-388 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T16 394-402 Phenotype denotes lethargy http://purl.obolibrary.org/obo/HP_0001254
T17 428-437 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 606-628 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T9 1279-1294 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T10 1321-1333 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

MyTest

Id Subject Object Predicate Lexical cue
32655581-32007145-34771596 117-119 32007145 denotes 43
32655581-31995857-34771597 269-271 31995857 denotes 45
32655581-32007143-34771598 468-470 32007143 denotes 46
32655581-32412156-34771599 630-632 32412156 denotes 47
32655581-32402155-34771600 751-753 32402155 denotes 48
32655581-32391310-34771601 991-993 32391310 denotes 49
32655581-32408338-34771602 995-997 32408338 denotes 50
32655581-32094336-34771603 1102-1104 32094336 denotes 51
32655581-32142651-34771604 1106-1108 32142651 denotes 52
32655581-28466096-34771605 1362-1364 28466096 denotes 19
32655581-32086938-34771606 1440-1442 32086938 denotes 54

TEST0

Id Subject Object Predicate Lexical cue
32655581-117-123-3171169 117-119 ["32007145"] denotes 43
32655581-147-153-3171170 269-271 ["31995857"] denotes 45
32655581-194-200-3171171 468-470 ["32007143"] denotes 46
32655581-157-163-3171172 630-632 ["32412156"] denotes 47
32655581-116-122-3171173 751-753 ["32402155"] denotes 48
32655581-235-241-3171174 991-993 ["32391310"] denotes 49
32655581-226-232-3171175 995-997 ["32408338"] denotes 50
32655581-102-108-3171176 1102-1104 ["32094336"] denotes 51
32655581-106-112-3171177 1106-1108 ["32142651"] denotes 52
32655581-209-215-3171178 1362-1364 ["28466096"] denotes 19
32655581-73-79-3171179 1440-1442 ["32086938"] denotes 54

2_test

Id Subject Object Predicate Lexical cue
32655581-32007145-34771596 117-119 32007145 denotes 43
32655581-31995857-34771597 269-271 31995857 denotes 45
32655581-32007143-34771598 468-470 32007143 denotes 46
32655581-32412156-34771599 630-632 32412156 denotes 47
32655581-32402155-34771600 751-753 32402155 denotes 48
32655581-32391310-34771601 991-993 32391310 denotes 49
32655581-32408338-34771602 995-997 32408338 denotes 50
32655581-32094336-34771603 1102-1104 32094336 denotes 51
32655581-32142651-34771604 1106-1108 32142651 denotes 52
32655581-28466096-34771605 1362-1364 28466096 denotes 19
32655581-32086938-34771606 1440-1442 32086938 denotes 54

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T44 0-121 Sentence denotes Like SARS-CoV-1 and MERS-CoV, SARS-CoV-2 is thought to have originated in bats through an unknown intermediary host (43).
T45 122-273 Sentence denotes At the time of writing, the number of global infections is estimated to be over 5,000,000 with over 340,000 deaths (44) and the R0 is roughly 2.2 (45).
T46 274-472 Sentence denotes Like other diseases caused by infectious CoVs, most patients present with flu-like symptoms including fever, cough, and lethargy, with the development of pneumonia and ARDS often proving fatal (46).
T47 473-634 Sentence denotes Furthermore, patients with underlying conditions are at risk for further complications if infected with COVID-19, such as those with cardiovascular disease (47).
T48 635-755 Sentence denotes SARS-CoV-2 has been posthumously detected in not only the lungs, but the pharynx, heart, liver, brain, and kidneys (48).
T49 756-999 Sentence denotes Transmission of SARS-CoV-2 is thought to mainly occur through direct contact/inhalation of respiratory droplets and aerosols from infected carriers, but indirect transmission by fomites has also been reported, although less efficient (49, 50).
T50 1000-1152 Sentence denotes SARS-CoV-2 viral entrance is thought to be mediated by binding of the S protein to the ACE2 receptor (51, 52), although this is still under debate (53).
T51 1153-1366 Sentence denotes While direct cytopathic effects are thought to play a major role in CoV pathology, studies have suggested that a dysregulated immune response resulting in pathological inflammation is also partly responsible (19).
T52 1367-1546 Sentence denotes With the current pandemic already surpassing the previous CoV outbreaks (54), rapid deployment of novel approaches to understanding and treating coronavirus infections are needed.