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PMC:7323532 / 453-1125 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 101-105 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T2 154-162 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T3 230-234 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 235-241 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T5 532-538 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 101-105 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 230-234 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 235-241 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T4 532-538 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 23-70 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T13 23-56 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 72-80 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 264-274 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T16 338-346 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 411-419 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 458-495 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T19 478-495 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T20 497-509 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T21 511-519 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T22 524-546 Disease denotes chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T23 532-546 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T25 654-671 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 101-105 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T4 101-105 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T5 230-234 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T6 230-234 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T7 282-283 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 532-538 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T9 532-538 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T10 532-538 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
33 0-8 Species denotes Patients Tax:9606
34 23-70 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
35 72-82 Species denotes SARS-CoV-2 Tax:2697049
36 374-382 Species denotes patients Tax:9606
37 9-17 Disease denotes infected MESH:D007239
38 101-112 Disease denotes lung damage MESH:D008171
39 264-274 Disease denotes infections MESH:D007239
40 317-336 Disease denotes coronavirus disease MESH:D018352
41 338-346 Disease denotes COVID-19 MESH:C000657245
42 411-419 Disease denotes COVID-19 MESH:C000657245
43 458-495 Disease denotes chronic obstructive pulmonary disease MESH:D029424
44 497-509 Disease denotes hypertension MESH:D006973
45 511-519 Disease denotes diabetes MESH:D003920
46 524-546 Disease denotes chronic kidney disease MESH:D051436
47 654-671 Disease denotes fungal infections MESH:D009181

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 120-137 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T2 120-137 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 154-168 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T7 458-495 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T8 497-509 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T9 524-546 Phenotype denotes chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T6 0-208 Sentence denotes Patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) experience major lung damage due to viral replication and the ensuing cytokine storm and complex inflammatory processes (1).
T7 209-352 Sentence denotes The severe damage to lung tissue can lead to secondary infections within a median of 17 days after onset of coronavirus disease (COVID-19) (2).
T8 353-672 Sentence denotes Most immunocompetent patients who develop severe forms of COVID-19 have >1 underlying condition, such as chronic obstructive pulmonary disease, hypertension, diabetes, or chronic kidney disease (3), but none of these predisposing factors generally are associated with an increased risk for developing fungal infections.