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PMC:7321036 / 95085-96154 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T680 27-32 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T681 55-64 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T682 65-75 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T683 198-203 Body_part denotes CCL11 http://purl.org/sig/ont/fma/fma241992
T684 204-211 Body_part denotes Eotaxin http://purl.org/sig/ont/fma/fma241992
T685 323-327 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T686 330-334 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T687 412-415 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T688 485-493 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T689 522-530 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T690 676-684 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1295 27-32 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28393 52-54 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T1297 284-288 http://purl.obolibrary.org/obo/CLO_0053704 denotes IL-8
T1298 387-392 http://purl.obolibrary.org/obo/CLO_0053703 denotes IL-16
T1299 405-407 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T1300 542-545 http://purl.obolibrary.org/obo/CLO_0008693 denotes R&D
T1301 542-545 http://purl.obolibrary.org/obo/CLO_0008770 denotes R&D
T1302 787-788 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1303 834-835 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1304 1021-1022 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1305 1043-1044 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T562 128-131 Chemical denotes MCP http://purl.obolibrary.org/obo/CHEBI_132592|http://purl.obolibrary.org/obo/CHEBI_50099
T564 174-178 Chemical denotes CCL7 http://purl.obolibrary.org/obo/CHEBI_138183
T565 179-182 Chemical denotes MCP http://purl.obolibrary.org/obo/CHEBI_132592|http://purl.obolibrary.org/obo/CHEBI_50099
T567 191-194 Chemical denotes MCP http://purl.obolibrary.org/obo/CHEBI_132592|http://purl.obolibrary.org/obo/CHEBI_50099
T569 219-222 Chemical denotes MCP http://purl.obolibrary.org/obo/CHEBI_132592|http://purl.obolibrary.org/obo/CHEBI_50099
T571 232-237 Chemical denotes MIP-3 http://purl.obolibrary.org/obo/CHEBI_138161
T572 264-269 Chemical denotes CXCL5 http://purl.obolibrary.org/obo/CHEBI_138180
T573 284-286 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T575 290-295 Chemical denotes CXCL9 http://purl.obolibrary.org/obo/CHEBI_138154
T576 301-307 Chemical denotes CXCL10 http://purl.obolibrary.org/obo/CHEBI_138157
T577 308-313 Chemical denotes IP-10 http://purl.obolibrary.org/obo/CHEBI_138157
T578 308-310 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T579 323-325 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T581 330-332 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T583 337-339 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T585 345-347 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T587 351-353 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T589 357-359 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T591 363-365 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T593 370-372 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T595 380-382 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T597 387-389 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T599 394-396 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T601 402-404 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T603 409-411 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120
T604 417-420 Chemical denotes MMP http://purl.obolibrary.org/obo/CHEBI_340824|http://purl.obolibrary.org/obo/CHEBI_59761
T606 568-570 Chemical denotes MN http://purl.obolibrary.org/obo/CHEBI_141442

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T478 337-343 http://purl.obolibrary.org/obo/GO_0005152 denotes IL-1RA

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2165 123-127 Gene denotes CCL2 Gene:6347
2166 148-152 Gene denotes CCL4 Gene:6351
2167 153-159 Gene denotes MIP-1β Gene:6351
2168 161-165 Gene denotes CCL5 Gene:6352
2169 166-172 Gene denotes RANTES Gene:6352
2170 174-178 Gene denotes CCL7 Gene:6354
2171 186-190 Gene denotes CCL8 Gene:6355
2172 198-203 Gene denotes CCL11 Gene:6356
2173 204-211 Gene denotes Eotaxin Gene:6356
2174 213-218 Gene denotes CCL13 Gene:6357
2175 226-231 Gene denotes CCL20 Gene:6364
2176 232-238 Gene denotes MIP-3α Gene:6364
2177 240-245 Gene denotes CXCL1 Gene:2919
2178 246-250 Gene denotes GROα Gene:2919
2179 252-257 Gene denotes CXCL2 Gene:2920
2180 258-262 Gene denotes GROβ Gene:2919
2181 264-269 Gene denotes CXCL5 Gene:6374
2182 270-276 Gene denotes ENA-78 Gene:6374
2183 278-283 Gene denotes CXCL8 Gene:3576
2184 284-288 Gene denotes IL-8 Gene:3576
2185 290-295 Gene denotes CXCL9 Gene:4283
2186 296-299 Gene denotes MIG Gene:4283
2187 301-307 Gene denotes CXCL10 Gene:3627
2188 308-313 Gene denotes IP-10 Gene:3627
2189 315-321 Gene denotes CXCL16 Gene:58191
2190 323-328 Gene denotes IL-1α Gene:3552
2191 330-335 Gene denotes IL-1β Gene:3552
2192 337-343 Gene denotes IL-1RA Gene:3557
2193 345-349 Gene denotes IL-4 Gene:3565
2194 351-355 Gene denotes IL-6 Gene:3569
2195 357-361 Gene denotes IL-7 Gene:3574
2196 363-368 Gene denotes IL-10 Gene:3586
2197 380-385 Gene denotes IL-15 Gene:3600
2198 387-392 Gene denotes IL-16 Gene:3603
2199 394-400 Gene denotes IL-17A Gene:3605
2200 402-407 Gene denotes IL-22 Gene:50616
2201 409-415 Gene denotes GM-CSF Gene:1437
2202 417-422 Gene denotes MMP-9 Gene:4318
2203 424-430 Gene denotes S100A8 Gene:6279
2204 432-436 Gene denotes TNFα Gene:7124
2205 438-442 Gene denotes TGFβ Gene:7039
2206 448-457 Gene denotes Trappin-2 Gene:5266
2207 458-464 Gene denotes Elafin Gene:5266
2208 18-26 Disease denotes infected MESH:D007239
2209 568-570 CellLine denotes MN CVCL:U508

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T832 0-465 Sentence denotes Supernatants from infected cells were evaluated for 34 cytokines/chemokines by multiplex ELISA for the following analytes: CCL2/MCP-1, CCL3/MIP-1α, CCL4/MIP-1β, CCL5/RANTES, CCL7/MCP-3, CCL8/MCP-2, CCL11/Eotaxin, CCL13/MCP-4, CCL20/MIP-3α, CXCL1/GROα, CXCL2/GROβ, CXCL5/ENA-78, CXCL8/IL-8, CXCL9/MIG, CXCL10/IP-10, CXCL16, IL-1α, IL-1β, IL-1RA, IL-4, IL-6, IL-7, IL-10, IL-12p70, IL-15, IL-16, IL-17A, IL-22, GM-CSF, MMP-9, S100A8, TNFα, TGFβ, and Trappin-2/Elafin.
T833 466-602 Sentence denotes All antibodies and cytokine standards were purchased as antibody pairs from R&D Systems (Minneapolis, MN) or Peprotech (Rocky Hill, NJ).
T834 603-761 Sentence denotes Individual magnetic Luminex bead sets (Luminex Corp, CA) were coupled to cytokine-specific capture antibodies according to the manufacturer’s recommendations.
T835 762-851 Sentence denotes Samples were analyzed on a Luminex MAGPIX platform and quantified using a standard curve.
T836 852-912 Sentence denotes For each bead region, > 50 beads were collected per analyte.
T837 913-1069 Sentence denotes The median fluorescence intensity of these beads was recorded for each bead and was used for analysis using a custom R script and a 5P regression algorithm.