PMC:7321036 / 93432-94195 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T663","span":{"begin":32,"end":37},"obj":"Body_part"},{"id":"T664","span":{"begin":158,"end":163},"obj":"Body_part"},{"id":"T665","span":{"begin":350,"end":355},"obj":"Body_part"},{"id":"T666","span":{"begin":420,"end":429},"obj":"Body_part"},{"id":"T667","span":{"begin":434,"end":444},"obj":"Body_part"},{"id":"T668","span":{"begin":450,"end":453},"obj":"Body_part"},{"id":"T669","span":{"begin":464,"end":469},"obj":"Body_part"},{"id":"T670","span":{"begin":501,"end":504},"obj":"Body_part"},{"id":"T671","span":{"begin":558,"end":561},"obj":"Body_part"},{"id":"T672","span":{"begin":646,"end":653},"obj":"Body_part"},{"id":"T673","span":{"begin":670,"end":674},"obj":"Body_part"}],"attributes":[{"id":"A663","pred":"fma_id","subj":"T663","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A664","pred":"fma_id","subj":"T664","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A665","pred":"fma_id","subj":"T665","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A666","pred":"fma_id","subj":"T666","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A667","pred":"fma_id","subj":"T667","obj":"http://purl.org/sig/ont/fma/fma241981"},{"id":"A668","pred":"fma_id","subj":"T668","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A669","pred":"fma_id","subj":"T669","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A670","pred":"fma_id","subj":"T670","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A671","pred":"fma_id","subj":"T671","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A672","pred":"fma_id","subj":"T672","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A673","pred":"fma_id","subj":"T673","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T367","span":{"begin":183,"end":191},"obj":"Disease"},{"id":"T368","span":{"begin":308,"end":317},"obj":"Disease"}],"attributes":[{"id":"A367","pred":"mondo_id","subj":"T367","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A368","pred":"mondo_id","subj":"T368","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1278","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0001601"},{"id":"T1279","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0050025"},{"id":"T1280","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054264"},{"id":"T1281","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054265"},{"id":"T1282","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054266"},{"id":"T1283","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054267"},{"id":"T1284","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054268"},{"id":"T1285","span":{"begin":22,"end":26},"obj":"http://purl.obolibrary.org/obo/CLO_0054269"},{"id":"T1286","span":{"begin":32,"end":37},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1287","span":{"begin":158,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1288","span":{"begin":350,"end":355},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1289","span":{"begin":464,"end":469},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1290","span":{"begin":670,"end":674},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T553","span":{"begin":67,"end":71},"obj":"Chemical"},{"id":"T554","span":{"begin":75,"end":83},"obj":"Chemical"},{"id":"T555","span":{"begin":252,"end":261},"obj":"Chemical"},{"id":"T556","span":{"begin":646,"end":653},"obj":"Chemical"},{"id":"T557","span":{"begin":714,"end":720},"obj":"Chemical"},{"id":"T558","span":{"begin":737,"end":740},"obj":"Chemical"}],"attributes":[{"id":"A553","pred":"chebi_id","subj":"T553","obj":"http://purl.obolibrary.org/obo/CHEBI_28262"},{"id":"A554","pred":"chebi_id","subj":"T554","obj":"http://purl.obolibrary.org/obo/CHEBI_90705"},{"id":"A555","pred":"chebi_id","subj":"T555","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A556","pred":"chebi_id","subj":"T556","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A557","pred":"chebi_id","subj":"T557","obj":"http://purl.obolibrary.org/obo/CHEBI_35225"},{"id":"A558","pred":"chebi_id","subj":"T558","obj":"http://purl.obolibrary.org/obo/CHEBI_8984"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T469","span":{"begin":700,"end":705},"obj":"http://purl.obolibrary.org/obo/GO_0019835"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-PubTator","denotations":[{"id":"2098","span":{"begin":183,"end":193},"obj":"Species"},{"id":"2099","span":{"begin":67,"end":71},"obj":"Chemical"},{"id":"2100","span":{"begin":75,"end":83},"obj":"Chemical"},{"id":"2101","span":{"begin":484,"end":490},"obj":"Chemical"},{"id":"2102","span":{"begin":709,"end":720},"obj":"Chemical"},{"id":"2103","span":{"begin":737,"end":740},"obj":"Chemical"},{"id":"2104","span":{"begin":169,"end":177},"obj":"Disease"},{"id":"2105","span":{"begin":308,"end":317},"obj":"Disease"},{"id":"2106","span":{"begin":341,"end":349},"obj":"Disease"},{"id":"2107","span":{"begin":22,"end":31},"obj":"CellLine"}],"attributes":[{"id":"A2098","pred":"tao:has_database_id","subj":"2098","obj":"Tax:2697049"},{"id":"A2099","pred":"tao:has_database_id","subj":"2099","obj":"MESH:D004121"},{"id":"A2100","pred":"tao:has_database_id","subj":"2100","obj":"MESH:C093642"},{"id":"A2101","pred":"tao:has_database_id","subj":"2101","obj":"MESH:C411644"},{"id":"A2103","pred":"tao:has_database_id","subj":"2103","obj":"MESH:D012967"},{"id":"A2104","pred":"tao:has_database_id","subj":"2104","obj":"MESH:D007239"},{"id":"A2105","pred":"tao:has_database_id","subj":"2105","obj":"MESH:D007239"},{"id":"A2106","pred":"tao:has_database_id","subj":"2106","obj":"MESH:D007239"},{"id":"A2107","pred":"tao:has_database_id","subj":"2107","obj":"CVCL:0023"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}

{"project":"LitCovid-sentences","denotations":[{"id":"T820","span":{"begin":0,"end":126},"obj":"Sentence"},{"id":"T821","span":{"begin":127,"end":318},"obj":"Sentence"},{"id":"T822","span":{"begin":319,"end":445},"obj":"Sentence"},{"id":"T823","span":{"begin":446,"end":641},"obj":"Sentence"},{"id":"T824","span":{"begin":642,"end":763},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Approximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot."}