
PMC:7321036 / 29840-30812
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7321036","sourcedb":"PMC","sourceid":"7321036","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7321036","text":"To further link kinase activities to downstream protein complexes, enrichment of up- or downregulated phosphorylation sites was determined within a curated set of human protein complexes defined by CORUM (Giurgiu et al., 2019; Figures 4E and S2C). This analysis revealed significant changes in phosphorylation of splicing related complexes (spliceosome), the proteasome (PA700-20S-PA28), and chromatin remodeling complexes (HuCHRAC and MLL2). In addition, a subset of regulated phosphorylation sites were detected that have known regulatory functions or high predicted functional scores (Ochoa et al., 2020) that are linked to regulation of protein activities (Table S5). Consistent with the observed signaling changes described above, these regulatory phosphorylation sites are involved in activation of chaperones (including HSP90), proteasome activity, inhibition of the anaphase-promoting complex (APC), and regulation of HDACs and cytoskeleton proteins, among others.","tracks":[{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T168","span":{"begin":60,"end":129},"obj":"GO:0019835"}],"attributes":[{"subj":"T168","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T228","span":{"begin":48,"end":65},"obj":"Body_part"},{"id":"T229","span":{"begin":48,"end":55},"obj":"Body_part"},{"id":"T230","span":{"begin":169,"end":186},"obj":"Body_part"},{"id":"T231","span":{"begin":169,"end":176},"obj":"Body_part"},{"id":"T232","span":{"begin":392,"end":401},"obj":"Body_part"},{"id":"T233","span":{"begin":641,"end":648},"obj":"Body_part"},{"id":"T234","span":{"begin":936,"end":948},"obj":"Body_part"},{"id":"T235","span":{"begin":949,"end":957},"obj":"Body_part"}],"attributes":[{"id":"A228","pred":"fma_id","subj":"T228","obj":"http://purl.org/sig/ont/fma/fma67906"},{"id":"A229","pred":"fma_id","subj":"T229","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A230","pred":"fma_id","subj":"T230","obj":"http://purl.org/sig/ont/fma/fma67906"},{"id":"A231","pred":"fma_id","subj":"T231","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A232","pred":"fma_id","subj":"T232","obj":"http://purl.org/sig/ont/fma/fma67526"},{"id":"A233","pred":"fma_id","subj":"T233","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A234","pred":"fma_id","subj":"T234","obj":"http://purl.org/sig/ont/fma/fma63834"},{"id":"A235","pred":"fma_id","subj":"T235","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T228","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T229","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T230","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T231","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T232","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T233","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T234","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T235","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T233","span":{"begin":23,"end":33},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T234","span":{"begin":48,"end":65},"obj":"http://purl.obolibrary.org/obo/GO_0043234"},{"id":"T235","span":{"begin":146,"end":147},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T236","span":{"begin":163,"end":176},"obj":"http://purl.obolibrary.org/obo/PR_000029067"},{"id":"T237","span":{"begin":456,"end":457},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T238","span":{"begin":649,"end":659},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T239","span":{"begin":667,"end":669},"obj":"http://purl.obolibrary.org/obo/CLO_0008933"},{"id":"T240","span":{"begin":701,"end":710},"obj":"http://purl.obolibrary.org/obo/SO_0000418"},{"id":"T241","span":{"begin":791,"end":801},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T242","span":{"begin":846,"end":854},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"}],"attributes":[{"subj":"T233","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T234","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T235","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T236","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T237","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T238","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T239","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T240","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T241","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T242","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T194","span":{"begin":48,"end":55},"obj":"Chemical"},{"id":"T195","span":{"begin":169,"end":176},"obj":"Chemical"},{"id":"T196","span":{"begin":641,"end":648},"obj":"Chemical"},{"id":"T197","span":{"begin":667,"end":669},"obj":"Chemical"},{"id":"T198","span":{"begin":902,"end":905},"obj":"Chemical"},{"id":"T199","span":{"begin":949,"end":957},"obj":"Chemical"}],"attributes":[{"id":"A194","pred":"chebi_id","subj":"T194","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A195","pred":"chebi_id","subj":"T195","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A196","pred":"chebi_id","subj":"T196","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A197","pred":"chebi_id","subj":"T197","obj":"http://purl.obolibrary.org/obo/CHEBI_29386"},{"id":"A198","pred":"chebi_id","subj":"T198","obj":"http://purl.obolibrary.org/obo/CHEBI_80551"},{"id":"A199","pred":"chebi_id","subj":"T199","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T194","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T195","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T196","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T197","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T198","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T199","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T197","span":{"begin":16,"end":33},"obj":"http://purl.obolibrary.org/obo/GO_0016301"},{"id":"T198","span":{"begin":88,"end":117},"obj":"http://purl.obolibrary.org/obo/GO_0042326"},{"id":"T199","span":{"begin":102,"end":117},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T200","span":{"begin":294,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T201","span":{"begin":313,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0045292"},{"id":"T202","span":{"begin":392,"end":412},"obj":"http://purl.obolibrary.org/obo/GO_0006338"},{"id":"T203","span":{"begin":468,"end":493},"obj":"http://purl.obolibrary.org/obo/GO_0042325"},{"id":"T204","span":{"begin":478,"end":493},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T205","span":{"begin":627,"end":637},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T206","span":{"begin":701,"end":710},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T207","span":{"begin":753,"end":768},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T208","span":{"begin":874,"end":882},"obj":"http://purl.obolibrary.org/obo/GO_0051322"},{"id":"T209","span":{"begin":912,"end":922},"obj":"http://purl.obolibrary.org/obo/GO_0065007"}],"attributes":[{"subj":"T197","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T198","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T199","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T200","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T201","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T202","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T203","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T204","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T205","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T206","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T207","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T208","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T209","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"498","span":{"begin":436,"end":440},"obj":"Gene"},{"id":"499","span":{"begin":827,"end":832},"obj":"Gene"},{"id":"500","span":{"begin":163,"end":168},"obj":"Species"},{"id":"501","span":{"begin":902,"end":905},"obj":"Disease"}],"attributes":[{"id":"A498","pred":"tao:has_database_id","subj":"498","obj":"Gene:9757"},{"id":"A499","pred":"tao:has_database_id","subj":"499","obj":"Gene:3320"},{"id":"A500","pred":"tao:has_database_id","subj":"500","obj":"Tax:9606"},{"id":"A501","pred":"tao:has_database_id","subj":"501","obj":"MESH:D011125"},{"subj":"498","pred":"source","obj":"LitCovid-PubTator"},{"subj":"499","pred":"source","obj":"LitCovid-PubTator"},{"subj":"500","pred":"source","obj":"LitCovid-PubTator"},{"subj":"501","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T194","span":{"begin":0,"end":247},"obj":"Sentence"},{"id":"T195","span":{"begin":248,"end":442},"obj":"Sentence"},{"id":"T196","span":{"begin":443,"end":671},"obj":"Sentence"},{"id":"T197","span":{"begin":672,"end":972},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T194","pred":"source","obj":"LitCovid-sentences"},{"subj":"T195","pred":"source","obj":"LitCovid-sentences"},{"subj":"T196","pred":"source","obj":"LitCovid-sentences"},{"subj":"T197","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32645325-30357367-20773067","span":{"begin":221,"end":225},"obj":"30357367"},{"id":"32645325-31819260-20773068","span":{"begin":602,"end":606},"obj":"31819260"}],"attributes":[{"subj":"32645325-30357367-20773067","pred":"source","obj":"2_test"},{"subj":"32645325-31819260-20773068","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PMC-OGER-BB","color":"#93ec96","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93aa"},{"id":"LitCovid-PD-CLO","color":"#93c4ec"},{"id":"LitCovid-PD-CHEBI","color":"#deec93"},{"id":"LitCovid-PD-GO-BP","color":"#e093ec"},{"id":"LitCovid-PubTator","color":"#93ecc6"},{"id":"LitCovid-sentences","color":"#ecac93"},{"id":"2_test","color":"#9393ec"}]}]}}