PMC:7321036 / 29840-30812
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T168 | 60-129 | GO:0019835 | denotes | lexes, enrichment of up- or downregulated phosphorylation sites was d |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T228 | 48-65 | Body_part | denotes | protein complexes | http://purl.org/sig/ont/fma/fma67906 |
| T229 | 48-55 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T230 | 169-186 | Body_part | denotes | protein complexes | http://purl.org/sig/ont/fma/fma67906 |
| T231 | 169-176 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T232 | 392-401 | Body_part | denotes | chromatin | http://purl.org/sig/ont/fma/fma67526 |
| T233 | 641-648 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T234 | 936-948 | Body_part | denotes | cytoskeleton | http://purl.org/sig/ont/fma/fma63834 |
| T235 | 949-957 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T233 | 23-33 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activities |
| T234 | 48-65 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complexes |
| T235 | 146-147 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T236 | 163-176 | http://purl.obolibrary.org/obo/PR_000029067 | denotes | human protein |
| T237 | 456-457 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T238 | 649-659 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activities |
| T239 | 667-669 | http://purl.obolibrary.org/obo/CLO_0008933 | denotes | S5 |
| T240 | 701-710 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signaling |
| T241 | 791-801 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T242 | 846-854 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T194 | 48-55 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T195 | 169-176 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T196 | 641-648 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T197 | 667-669 | Chemical | denotes | S5 | http://purl.obolibrary.org/obo/CHEBI_29386 |
| T198 | 902-905 | Chemical | denotes | APC | http://purl.obolibrary.org/obo/CHEBI_80551 |
| T199 | 949-957 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T197 | 16-33 | http://purl.obolibrary.org/obo/GO_0016301 | denotes | kinase activities |
| T198 | 88-117 | http://purl.obolibrary.org/obo/GO_0042326 | denotes | downregulated phosphorylation |
| T199 | 102-117 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T200 | 294-309 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T201 | 313-321 | http://purl.obolibrary.org/obo/GO_0045292 | denotes | splicing |
| T202 | 392-412 | http://purl.obolibrary.org/obo/GO_0006338 | denotes | chromatin remodeling |
| T203 | 468-493 | http://purl.obolibrary.org/obo/GO_0042325 | denotes | regulated phosphorylation |
| T204 | 478-493 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T205 | 627-637 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
| T206 | 701-710 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T207 | 753-768 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T208 | 874-882 | http://purl.obolibrary.org/obo/GO_0051322 | denotes | anaphase |
| T209 | 912-922 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 498 | 436-440 | Gene | denotes | MLL2 | Gene:9757 |
| 499 | 827-832 | Gene | denotes | HSP90 | Gene:3320 |
| 500 | 163-168 | Species | denotes | human | Tax:9606 |
| 501 | 902-905 | Disease | denotes | APC | MESH:D011125 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T194 | 0-247 | Sentence | denotes | To further link kinase activities to downstream protein complexes, enrichment of up- or downregulated phosphorylation sites was determined within a curated set of human protein complexes defined by CORUM (Giurgiu et al., 2019; Figures 4E and S2C). |
| T195 | 248-442 | Sentence | denotes | This analysis revealed significant changes in phosphorylation of splicing related complexes (spliceosome), the proteasome (PA700-20S-PA28), and chromatin remodeling complexes (HuCHRAC and MLL2). |
| T196 | 443-671 | Sentence | denotes | In addition, a subset of regulated phosphorylation sites were detected that have known regulatory functions or high predicted functional scores (Ochoa et al., 2020) that are linked to regulation of protein activities (Table S5). |
| T197 | 672-972 | Sentence | denotes | Consistent with the observed signaling changes described above, these regulatory phosphorylation sites are involved in activation of chaperones (including HSP90), proteasome activity, inhibition of the anaphase-promoting complex (APC), and regulation of HDACs and cytoskeleton proteins, among others. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32645325-30357367-20773067 | 221-225 | 30357367 | denotes | 2019 |
| 32645325-31819260-20773068 | 602-606 | 31819260 | denotes | 2020 |